PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026239.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 278aa    MW: 29970.7 Da    PI: 8.9616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026239.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11156203455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RRd+i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  Aco026239.1 156 SHSLAERARRDKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 203
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.69E-11150207No hitNo description
SuperFamilySSF474593.27E-18150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-19152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.19152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDPPSLVPEM WPPPQPHLPL AGMRLGGIMI GRVGPSSSSA AAAAAEASAA AAAGPRDLSV  60
DESSLTEQSG AAGRGRRRRR DTAASEDESS KPVSTSSGNE MTDSEVKRLK VMKSGDENSK  120
GEAALKKPTD QNPLPPEPPK QDYIHVRARR GQATDSHSLA ERARRDKISE RMKILQDLVP  180
GCNKVIGKAS VLDEIINYIQ ALQRQVEFLS MKLEAVNSRM NSGIEGFPPK DYPSQAYDAP  240
TALAFNPQTP REYGQGSAAE WLHMQVGGAF ERISKQSK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096486.10.0transcription factor bHLH79-like isoform X1
SwissprotQ84T089e-89BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A199UV381e-174A0A199UV38_ANACO; Transcription factor bHLH79
STRINGXP_008808720.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-76BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]