PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025287.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 267aa    MW: 28016.3 Da    PI: 7.5778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025287.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11148195455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++ +L++l+P +    +k   Ka++L + ++YI+ Lq
  Aco025287.1 148 SHSLAERARREKISERMKTLQDLVPGC----NKVIGKASVLDEIINYIQALQ 195
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.71E-11142199No hitNo description
SuperFamilySSF474596.15E-18142212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18144212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.475144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MWQPLPMVGV PVAGPGAERG AGTLFAAAAA AAGVVGNRDH SVDESSVTES SGGSRGAARR  60
RRRDSAAAEG ESPKLASATS GGGNGLTNSE GKRLKGVKSV DDNVNVKGAA EASSGMANKQ  120
MDQIAPPPEP PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKTLQDL VPGCNKVIGK  180
ASVLDEIINY IQALQCQVEF LSMKLEAVNS SMDTGIEAFP PKDFGPQTFN ASSSLPFSLE  240
TPREYGQGSA TEWLHMQVGG ALDRVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6669750.0KM666975.1 Ananas bracteatus clone 52395b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091488.10.0transcription factor bHLH79-like
SwissprotQ69WS33e-87BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A199UFX71e-163A0A199UFX7_ANACO; Transcription factor BPE
STRINGXP_008808720.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-69BIG PETAL P