PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco022101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 268aa MW: 29595.1 Da PI: 8.469 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.8 | 3.3e-19 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r tf kRr+g++KKA+EL +LCd++++v+++++ Aco022101.1 11 ISNDSTRRATFKKRRKGLMKKASELATLCDVRACVVVYAP 50 9*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.334 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.56E-34 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 6.4E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-25 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-18 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MARKKVNLAW ISNDSTRRAT FKKRRKGLMK KASELATLCD VRACVVVYAP GEAQAEVWPS 60 PAEAARVLAR FKSMPEMEQC KKMMNQEGFL RQRVAKAQEQ LRKQERENRE LETTLLMYDG 120 LNSVAEGAGA GAVGRLRDLG IEDATSLAWM VEMKAKAVQE RIDILKAQMH HAPSAAAGAA 180 TSSSSHAAAA IQQHQGPTDA LVTKDKTPLE AAMEALQRQN WFMEVMNPSI DNNVLFGGVS 240 GPAEEMMLMQ PYIETTMPWL DPYFPLN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVNLAWISNDSTRRATFKKRR |
2 | 21 | 25 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087252.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A199V9M7 | 0.0 | A0A199V9M7_ANACO; Agamous-like MADS-box protein AGL80 | ||||
STRING | XP_008800341.1 | 1e-113 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-39 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Aco022101.1 |