PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021560.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 268aa    MW: 27918.3 Da    PI: 6.9808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001197119123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k+F++   L  H  +H
  Aco021560.1  97 YECKTCSKCFPSFQALGGHRASH 119
                  99**********99999998887 PP
2zf-C2H213.40.00024168190123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Aco021560.1 168 HECSICGSEFNSGQALGGHMRRH 190
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-1196121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-896119No hitNo description
SMARTSM003550.1897119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.32597124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-8163190No hitNo description
PfamPF139126.8E-12167191IPR007087Zinc finger, C2H2
SMARTSM003550.021168190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598168190IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEIKEETMGS NYSGNGVGGG GGGAIAAFAK GKRTKRQRPG PAVGDSSSGS SAASASVITE  60
EDEDMANCLI LLARGRCAAP AATDQHPPPG TAVTGVYECK TCSKCFPSFQ ALGGHRASHK  120
KPKHAAALAN ANVYEEINRK PPAPPMHDEE PVQVVRPTVG AVKSARVHEC SICGSEFNSG  180
QALGGHMRRH RPLIAVAVPE EPKSERTSVV LELDLNLPAP ADDDDDHHHD QSLDLVHRGF  240
AFGTAAAAAK RPLIFSSSGS ALVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085128.10.0zinc finger protein ZAT11-like
STRINGXP_008807698.17e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.19e-40C2H2 family protein