PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco021074.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 424aa MW: 48684.5 Da PI: 8.026

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco021074.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.4	5.3e-14	31	115	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++Y +e+GF v+k+++k +g++t Cs++gk +++ ++ + + + +t+C a++++ + d+ +++k+ leHnH l+ Aco021074.1 31 NFYKHYTQELGFGVVKRSTKMI--DGKVTYVVIACSRHGKMHRTVTN---LHPRPSAVKTNCLARINMVINADSSCVISKIILEHNHVLS 115 6*************987776..999***********99888...344445679**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-11	31	115	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDEETNYEVR DVNISAPEIG MSFINFEAIF NFYKHYTQEL GFGVVKRSTK MIDGKVTYVV 60 IACSRHGKMH RTVTNLHPRP SAVKTNCLAR INMVINADSS CVISKIILEH NHVLSHYKSR 120 FFPYNRVIDP SVKRRLDLND RAGIRLNKSF NSIAVEVGEY ENLTFGENDA QGLYDPSLLS 180 SSHFPPHTLP TSLLEREEGE EEEKDLAWAW SIPLPFLLLP PCWCLKAWTW SLQRRRSSPF 240 ELGLELLREP SLSLDWKGPS SLLELWKRFL LLRVFRDSGT TLFGETGHYA TVRYLVANIL 300 YDRVAQVNII FSDTEYDCSM DAVTTLLAER FSGDPCDYGI VHSLDDGDYV VFFPSDKKRD 360 KAIRRSPVHS DKLTITAVLW EYNIGQRSHR FRSNYSYLIT LAQNYPVFKR TCHKQSTQKG 420 KTS*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDEETNYEVR DVNISAPEIG MSFINFEAIF NFYKHYTQEL GFGVVKRSTK MIDGKVTYVV  60
IACSRHGKMH RTVTNLHPRP SAVKTNCLAR INMVINADSS CVISKIILEH NHVLSHYKSR  120
FFPYNRVIDP SVKRRLDLND RAGIRLNKSF NSIAVEVGEY ENLTFGENDA QGLYDPSLLS  180
SSHFPPHTLP TSLLEREEGE EEEKDLAWAW SIPLPFLLLP PCWCLKAWTW SLQRRRSSPF  240
ELGLELLREP SLSLDWKGPS SLLELWKRFL LLRVFRDSGT TLFGETGHYA TVRYLVANIL  300
YDRVAQVNII FSDTEYDCSM DAVTTLLAER FSGDPCDYGI VHSLDDGDYV VFFPSDKKRD  360
KAIRRSPVHS DKLTITAVLW EYNIGQRSHR FRSNYSYLIT LAQNYPVFKR TCHKQSTQKG  420
KTS*

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16056	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	2e-12	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Aco021074.1