PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017455.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 378aa    MW: 42475.6 Da    PI: 6.2577
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017455.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.22.7e-38501491100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  aCaaCk++rrkC++dC+la yfpa+qpk+f+n+h+lFG+sn+l++lk+l++ ++++am+s++yeA++r   P  G++g+i +lq +++ql+ae+++++
  Aco017455.1  50 ACAACKHQRRKCTADCPLALYFPADQPKQFQNAHRLFGVSNILRILKDLDPVQKSEAMKSILYEANVREYLPDIGCAGLIVDLQVKICQLRAEIERIN 147
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  ++
  Aco017455.1 148 SQ 149
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.61249150IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3550146IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDVSGDEGES MGGEPHHSTF YSSTIPSAAA AAAAYSLFCM MAKGGTSRPA CAACKHQRRK  60
CTADCPLALY FPADQPKQFQ NAHRLFGVSN ILRILKDLDP VQKSEAMKSI LYEANVREYL  120
PDIGCAGLIV DLQVKICQLR AEIERINSQI AMYQSDQHQY YHSSTHLQLA PSSSTSQSPL  180
PPAIDNLNVR ISHADLPNYD DNNEMKFADP MWANQMYTNN ITDGYLDNTA TGVQQPFEAV  240
TDTIEQQYDE ISPYFDTIDE EKAYESRQDQ FHTHTSVCTH LWFIHGTGAT DDAEAISWRT  300
ERSKKCGSLS QAHQPHQLTR KWRLEFFPFF FRSMKVEGHA TIMPHRRHSF WSSQAKPSGE  360
ALPQSLATKL SPALWEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-225115712118LOB family transfactor Ramosa2.1
5ly0_B2e-225115712118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095977.11e-170LOB domain-containing protein 4-like
TrEMBLM0U3F21e-63M0U3F2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P25450_0012e-64(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-38LOB domain-containing protein 27