PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015755.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRF
Protein Properties Length: 277aa    MW: 30756.3 Da    PI: 7.0573
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015755.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.93.5e-23183221139
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 
                  ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr ++
  Aco015755.1 183 EPEPGRCRRTDGKKWRCSRDVIPDQKYCERHMHRGRIKK 221
                  69*********************************9765 PP
2QLQ43.97.5e-16118153237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  +FT  Qlq++++Q+l+yKy+a ++ vP +L+++i+k
  Aco015755.1 118 SFTVGQLQEMERQALIYKYMATGVAVPIHLILPIWK 153
                  79999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-7117153IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.152118153IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.2E-10118152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.461183228IPR014977WRC domain
PfamPF088791.8E-19184220IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MYSDDHNRLA DRPVVVNEHR DQLIHGVRAN KKLTLLSGRL IDEFVSHILQ VQCNLTPMEK  60
RLDENEEDPS PSSSVPVQGL GPDEEVGIEE TEEEEEEGEE GNKRKRRNRR RRNRRRASFT  120
VGQLQEMERQ ALIYKYMATG VAVPIHLILP IWKSVASSPV GPHRYPSLIG LGNLCLDFWN  180
NTEPEPGRCR RTDGKKWRCS RDVIPDQKYC ERHMHRGRIK KPHITAAAAD QTPPENTIVA  240
DSNHQASISD PAAANVDSGG GGGGGASSSS SSDASR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102115KRKRRNRRRRNRRR
2103114RKRRNRRRRNRR
3106113RNRRRRNR
4110115RRNRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096695.11e-156growth-regulating factor 10-like
TrEMBLA0A199VIT71e-106A0A199VIT7_ANACO; Growth-regulating factor 10
STRINGGSMUA_Achr8P12060_0014e-55(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-33growth-regulating factor 2