PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco015187.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 396aa MW: 41296.7 Da PI: 7.9205

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015187.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.6e-09	135	155	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg Aco015187.1 135 ACPDFRK-GSCKRGDACEFAHG 155 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	9.61E-5	129	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.5E-6	130	156	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.779	131	157	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-6	134	157	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-7	135	155	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	165	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	165	189	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MMMMAMGGEA AAAAAAAARR AHFNPTVEIP PPWSPLDDPA AGALGMGMGM GMGMGLSPSA 60 GGEYAAYLVG EEGGEEGDLP EEADVYASDD FRMYEFKVRR CARGRSHDWT ECPFAHPGEK 120 ARRRDPRKYH YSGTACPDFR KGSCKRGDAC EFAHGVFECW LHPARYRTQP CKDGTACRRR 180 VCFFAHTPDQ LRVLPPQHAS PRGGGGGAAG PPGTAAAAAL DSYDGSPLRH RAVEAAYLAK 240 GLMSSSPTST LMSPPVSPPS ESPPMSPGAA AAAAAAAGVR RASWPAVGAS VGDLVASLRQ 300 MQLGKVESPP SAWGFRGGGG FTPVGFCSLP TTPTRAVGGG GRMEKVNPEG DAEAVERVES 360 GRALRAKIFE KLSKETPSSA LATAPDFGWV SELVK*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MMMMAMGGEA AAAAAAAARR AHFNPTVEIP PPWSPLDDPA AGALGMGMGM GMGMGLSPSA  60
GGEYAAYLVG EEGGEEGDLP EEADVYASDD FRMYEFKVRR CARGRSHDWT ECPFAHPGEK  120
ARRRDPRKYH YSGTACPDFR KGSCKRGDAC EFAHGVFECW LHPARYRTQP CKDGTACRRR  180
VCFFAHTPDQ LRVLPPQHAS PRGGGGGAAG PPGTAAAAAL DSYDGSPLRH RAVEAAYLAK  240
GLMSSSPTST LMSPPVSPPS ESPPMSPGAA AAAAAAAGVR RASWPAVGAS VGDLVASLRQ  300
MQLGKVESPP SAWGFRGGGG FTPVGFCSLP TTPTRAVGGG GRMEKVNPEG DAEAVERVES  360
GRALRAKIFE KLSKETPSSA LATAPDFGWV SELVK*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC132486	1e-107	AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBank	AK106392	1e-107	AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence.
GenBank	AP014961	1e-107	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-107	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089197.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9FU27	1e-119	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A199UJK4	0.0	A0A199UJK4_ANACO; Zinc finger CCCH domain-containing protein 2
STRING	XP_008798608.1	1e-126	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	4e-78	C3H family protein

Link Out ? help Back to Top
Phytozome	Aco015187.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]