PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013597.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 372aa MW: 42231.2 Da PI: 6.8409

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013597.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H Aco013597.1 79 CSyeGCGKTFIDVGALRKHAHIH 101 77779**************8877 PP
2	zf-C2H2	13.9	0.00017	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F ++s LkrH H Aco013597.1 106 HVCHfeGCGKKFLDSSKLKRHFLIH 130 79*******************8877 PP
3	zf-C2H2	21.4	6.8e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL+ H++tH Aco013597.1 136 FVCPheGCGKAFSLDFNLRAHMKTH 160 89**********************9 PP
4	zf-C2H2	14.9	7.8e-05	166	191	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cgk++++ L++Hi+t H Aco013597.1 166 HVCPypECGKRYTNECKLRTHIKTqH 191 79**********************99 PP
5	zf-C2H2	16.1	3.3e-05	229	254	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp Cgk + + + L+ H+r+ H Aco013597.1 229 YACPydGCGKAYIHEYKLNLHLRReH 254 89*********************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-13	72	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	77	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0042	77	101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	79	101	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.48E-8	80	130	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.5E-13	104	126	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	13.131	106	135	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	106	130	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	108	130	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.42E-14	117	170	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-19	127	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	3.9E-4	136	160	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.321	136	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	160	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-7	164	189	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.01	166	191	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	166	196	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	168	191	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.43E-6	222	252	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-8	224	251	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.346	229	259	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0025	229	254	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	231	254	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEFQAHHYPF ERRPAIRDRT PAVRWCKEWI PQELVATGGK CSLLKWVRED KLKALEEKAE 60 EPKVEELKPE PTTEVLFLCS YEGCGKTFID VGALRKHAHI HGEKQHVCHF EGCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRAHMKTH SLENYHVCPY PECGKRYTNE 180 CKLRTHIKTQ HEKNAAIDAP KHTPPAEKVH TTPKTPAPNY ASATSDRPYA CPYDGCGKAY 240 IHEYKLNLHL RREHPNHNSD ENIGKNTPHT TDEAESGAAK TPNPKRKHNP VLQKAPPAKI 300 VRKAPNLVPP TAAAAATNSS IGNAKKQWAS KEVYEEEEED SEETEEDRDN IEEGWRNREA 360 NGDDEETEDE D*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEFQAHHYPF ERRPAIRDRT PAVRWCKEWI PQELVATGGK CSLLKWVRED KLKALEEKAE  60
EPKVEELKPE PTTEVLFLCS YEGCGKTFID VGALRKHAHI HGEKQHVCHF EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRAHMKTH SLENYHVCPY PECGKRYTNE  180
CKLRTHIKTQ HEKNAAIDAP KHTPPAEKVH TTPKTPAPNY ASATSDRPYA CPYDGCGKAY  240
IHEYKLNLHL RREHPNHNSD ENIGKNTPHT TDEAESGAAK TPNPKRKHNP VLQKAPPAKI  300
VRKAPNLVPP TAAAAATNSS IGNAKKQWAS KEVYEEEEED SEETEEDRDN IEEGWRNREA  360
NGDDEETEDE D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ubd_C	5e-33	79	189	8	118	PROTEIN (YY1 ZINC FINGER DOMAIN)
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Functional Description ? help Back to Top
Source	Description
UniProt	Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269\|PubMed:22508367, ECO:0000269\|PubMed:24451981, ECO:0000269\|PubMed:26961720}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269\|PubMed:26961720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020110595.1	0.0	uncharacterized zinc finger protein At4g06634 isoform X2
Swissprot	Q2V3L3	1e-128	YY1_ARATH; Zinc finger transcription factor YY1
TrEMBL	A0A199ULQ1	0.0	A0A199ULQ1_ANACO; Putative zinc finger protein
STRING	XP_008807673.1	1e-170	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2094	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-118	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aco013597.1

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720] Wu XY,Li T A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response. Front Plant Sci, 2017. 8: p. 323 [PMID:28348572]