PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013343.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRF

Protein Properties

Length: 607aa MW: 65749.1 Da PI: 9.3766

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013343.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.9	4e-24	268	312	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Aco013343.1 268 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 312 79****************************************996 PP
2	QLQ	61.3	2.6e-21	198	234	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+P+ Ll +i++ Aco013343.1 198 GPFTPSQWMELEHQALIYKYIVANAPIPSSLLIPIRR 234 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-12	198	234	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.6E-16	199	233	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.892	199	234	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	268	312	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	269	311	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
QKPPWFSELN TPNPPNPQNP PHSSSSSSPH HHHHKKCSLL LLLLLPKSNE PNSTHKLARP 60 GALPHHELRW WSRGGHGLWH GGGGGGASSS SSSSSPSLAP SLGPPPLSPS SGFLKHGRRG 120 SSVGGSEEAQ LRLLKMPRTT EHMLCFSSST KDDTFPYYNH HTPPPPPPSS TPSFLTNAGL 180 FSGSSNTSMN GVLARVRGPF TPSQWMELEH QALIYKYIVA NAPIPSSLLI PIRRSLNPSG 240 FPPFSAPSFG SSTLGWGNFQ LGFPGNADPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN 300 RGRHRSRKHV EGRSGHAAAR PSPTSSQAAS SAVLSTAEQQ AKSLGPSTTA DPCPAPFNRM 360 LMGKEKVNDY AADSQRLSML TSMSQKPIDS SFPISKQHNP FEEAAFSDNI NFLPAPKLNE 420 NSQTHPLRHF FDDWPKNHSD SSSLTWHEVE EMQCERTQLS ISIPMTSSDF SSSSSPTHEK 480 LTLSPPRLSR ESEFSQKQVN WVPISWESSI GGPLGEVLNN TNSTIPKDQS KNLSSSSLNL 540 SMDGWDLESS PSGVLQKANF GSVSSSTGSS PRPENPKAYE SHKSSGSLCN EILGSGLANS 600 LTMPSF*

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

QKPPWFSELN TPNPPNPQNP PHSSSSSSPH HHHHKKCSLL LLLLLPKSNE PNSTHKLARP  60
GALPHHELRW WSRGGHGLWH GGGGGGASSS SSSSSPSLAP SLGPPPLSPS SGFLKHGRRG  120
SSVGGSEEAQ LRLLKMPRTT EHMLCFSSST KDDTFPYYNH HTPPPPPPSS TPSFLTNAGL  180
FSGSSNTSMN GVLARVRGPF TPSQWMELEH QALIYKYIVA NAPIPSSLLI PIRRSLNPSG  240
FPPFSAPSFG SSTLGWGNFQ LGFPGNADPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN  300
RGRHRSRKHV EGRSGHAAAR PSPTSSQAAS SAVLSTAEQQ AKSLGPSTTA DPCPAPFNRM  360
LMGKEKVNDY AADSQRLSML TSMSQKPIDS SFPISKQHNP FEEAAFSDNI NFLPAPKLNE  420
NSQTHPLRHF FDDWPKNHSD SSSLTWHEVE EMQCERTQLS ISIPMTSSDF SSSSSPTHEK  480
LTLSPPRLSR ESEFSQKQVN WVPISWESSI GGPLGEVLNN TNSTIPKDQS KNLSSSSLNL  540
SMDGWDLESS PSGVLQKANF GSVSSSTGSS PRPENPKAYE SHKSSGSLCN EILGSGLANS  600
LTMPSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020104145.1	0.0	growth-regulating factor 6-like isoform X2
Swissprot	Q6AWY3	1e-122	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2H3XY57	0.0	A0A2H3XY57_PHODC; growth-regulating factor 6-like
STRING	XP_008790288.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-62	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Aco013343.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]