PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012568.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 269aa    MW: 30711.5 Da    PI: 5.5294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012568.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.3e-19100187196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+k +++s+v++  +l lp +f++eh   +++++t++lede+g +++  +   +++ +  l++GW++F+ +++L++gD +vF+l++ ++f  ++ +
  Aco012568.1 100 FVKSMVRSHVSSCFWLGLPSRFCKEHL--PPKEVTMVLEDENGAEFDAIY--IGTRTG--LSGGWRGFALEHNLEDGDALVFELTEPTRF--KIYI 187
                  89************************6..34779****************..555443..***********************9765666..6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2293189IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2493189IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-2998189No hitNo description
PfamPF023622.2E-17100188IPR003340B3 DNA binding domain
SMARTSM010191.6E-22100191IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83100191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MATDECSYEE LRRKRVLENL KHLEDLGISK ISKSLLEVAK SEHKQLVDEI DLRSYRKRYC  60
RSEQSGRGYT GRISSYEEQA RAVKKAEELQ SGLDPNNPSF VKSMVRSHVS SCFWLGLPSR  120
FCKEHLPPKE VTMVLEDENG AEFDAIYIGT RTGLSGGWRG FALEHNLEDG DALVFELTEP  180
TRFKIYIIKA IEDEVEADDE MIDDADTKQS MESMKNEEPD EQESPVSQNP PSKSGSNKRK  240
RRRVKLLIKQ RAKIILENGS PGEDPKSHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242KRKRRR
2238242RKRRR
3238245RKRRRVKL
4239243KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102157.11e-174B3 domain-containing protein Os05g0481400
SwissprotQ5KQI42e-91Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A199UP431e-147A0A199UP43_ANACO; B3 domain-containing protein
STRINGXP_008803014.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-46B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]