PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009946.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 424aa MW: 44951.3 Da PI: 7.2271

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009946.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.8	4.3e-09	139	159	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg Aco009946.1 139 ACPDFRK-GNCKRGDACEFAHG 159 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.4E-6	134	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.976	135	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	139	161	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-7	139	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	169	192	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.343	169	193	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MMMMGEGGRH LHRDPTVHAP PWSPFDDPTG GYGGGECSPY VMGGGAAALA AALQGYAAVA 60 AAAAAAAGEE EEEEELLDEA ELADAPVDAF SCDEFRMYEF KVRRCARGRS HDWTECPYAH 120 PGEKARRRDP RKYHYSGTAC PDFRKGNCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA 180 CRRRVCFFAH TPEQLRLLPQ QQQQQQQHQQ HQQQLLLASP RGSCSASSAP PPESYDGSPL 240 RRRALESSLS KGLASSSPTS TLLSPPLSPP SESPPISPSG SAAAAAALRR ASWPVAGASM 300 NELAASFRTM QLSKVKSAPS SCGFQLGGAF GSPRGSAGGF GGGFWSLPST PTKESAVGGG 360 LIAGFGDGAE LGLVGEEPPV QRVESGRALR AKMFERLSKD CAVAKSDTPT PTPDVAWISE 420 LVK*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MMMMGEGGRH LHRDPTVHAP PWSPFDDPTG GYGGGECSPY VMGGGAAALA AALQGYAAVA  60
AAAAAAAGEE EEEEELLDEA ELADAPVDAF SCDEFRMYEF KVRRCARGRS HDWTECPYAH  120
PGEKARRRDP RKYHYSGTAC PDFRKGNCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA  180
CRRRVCFFAH TPEQLRLLPQ QQQQQQQHQQ HQQQLLLASP RGSCSASSAP PPESYDGSPL  240
RRRALESSLS KGLASSSPTS TLLSPPLSPP SESPPISPSG SAAAAAALRR ASWPVAGASM  300
NELAASFRTM QLSKVKSAPS SCGFQLGGAF GSPRGSAGGF GGGFWSLPST PTKESAVGGG  360
LIAGFGDGAE LGLVGEEPPV QRVESGRALR AKMFERLSKD CAVAKSDTPT PTPDVAWISE  420
LVK*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-123	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097888.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9FU27	1e-127	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A199W525	0.0	A0A199W525_ANACO; Zinc finger CCCH domain-containing protein 2
STRING	GSMUA_Achr10P27910_001	1e-147	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	3e-69	C3H family protein

Link Out ? help Back to Top
Phytozome	Aco009946.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]