PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009946.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 424aa    MW: 44951.3 Da    PI: 7.2271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009946.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-09139159526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C++f++ G Ck+Gd C FaHg
  Aco009946.1 139 ACPDFRK-GNCKRGDACEFAHG 159
                  7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-6134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5139161IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7139159IPR000571Zinc finger, CCCH-type
SMARTSM0035612169192IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343169193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MMMMGEGGRH LHRDPTVHAP PWSPFDDPTG GYGGGECSPY VMGGGAAALA AALQGYAAVA  60
AAAAAAAGEE EEEEELLDEA ELADAPVDAF SCDEFRMYEF KVRRCARGRS HDWTECPYAH  120
PGEKARRRDP RKYHYSGTAC PDFRKGNCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA  180
CRRRVCFFAH TPEQLRLLPQ QQQQQQQHQQ HQQQLLLASP RGSCSASSAP PPESYDGSPL  240
RRRALESSLS KGLASSSPTS TLLSPPLSPP SESPPISPSG SAAAAAALRR ASWPVAGASM  300
NELAASFRTM QLSKVKSAPS SCGFQLGGAF GSPRGSAGGF GGGFWSLPST PTKESAVGGG  360
LIAGFGDGAE LGLVGEEPPV QRVESGRALR AKMFERLSKD CAVAKSDTPT PTPDVAWISE  420
LVK*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-123HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097888.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-127C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A199W5250.0A0A199W525_ANACO; Zinc finger CCCH domain-containing protein 2
STRINGGSMUA_Achr10P27910_0011e-147(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]