PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco009946.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C3H | ||||||||
Protein Properties | Length: 424aa MW: 44951.3 Da PI: 7.2271 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.3e-09 | 139 | 159 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg Aco009946.1 139 ACPDFRK-GNCKRGDACEFAHG 159 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.4E-6 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 139 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-7 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 169 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.343 | 169 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MMMMGEGGRH LHRDPTVHAP PWSPFDDPTG GYGGGECSPY VMGGGAAALA AALQGYAAVA 60 AAAAAAAGEE EEEEELLDEA ELADAPVDAF SCDEFRMYEF KVRRCARGRS HDWTECPYAH 120 PGEKARRRDP RKYHYSGTAC PDFRKGNCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA 180 CRRRVCFFAH TPEQLRLLPQ QQQQQQQHQQ HQQQLLLASP RGSCSASSAP PPESYDGSPL 240 RRRALESSLS KGLASSSPTS TLLSPPLSPP SESPPISPSG SAAAAAALRR ASWPVAGASM 300 NELAASFRTM QLSKVKSAPS SCGFQLGGAF GSPRGSAGGF GGGFWSLPST PTKESAVGGG 360 LIAGFGDGAE LGLVGEEPPV QRVESGRALR AKMFERLSKD CAVAKSDTPT PTPDVAWISE 420 LVK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-123 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020097888.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 1e-127 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A199W525 | 0.0 | A0A199W525_ANACO; Zinc finger CCCH domain-containing protein 2 | ||||
STRING | GSMUA_Achr10P27910_001 | 1e-147 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 3e-69 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco009946.1 |
Publications ? help Back to Top | |||
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