PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco009157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 22395.8 Da PI: 6.7442 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Aco009157.1 118 YECKTCSKCFPSFQALGGHRASH 140 99**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.98E-5 | 117 | 144 | No hit | No description |
Pfam | PF13912 | 1.2E-11 | 117 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.076 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MESPESPAAK SVAKRKRSKR LRPVPAAAAS SASSSSAEFS SGCTATAADD DDMAANCLIL 60 LAQGRCDSPA AAAADDNDVV EIRPPELQLP LPPARQGGDR QNEKFGGSRR FTAGFYVYEC 120 KTCSKCFPSF QALGGHRASH KKPRLSSASA EAAESKKEER GGGAVLSLDL NLPAPSDDVD 180 GRVAAFAESQ FQQQQQQQQL FSASSALVDC HY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108645 | 2e-31 | AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence. | |||
GenBank | AL606603 | 2e-31 | AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence. | |||
GenBank | AL606654 | 2e-31 | AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence. | |||
GenBank | AP014960 | 2e-31 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 2e-31 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CT833697 | 2e-31 | CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence. | |||
GenBank | CU405777 | 2e-31 | CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020112601.1 | 1e-152 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A199VV52 | 4e-65 | A0A199VV52_ANACO; Zinc finger protein ZAT5 | ||||
STRING | XP_008807698.1 | 9e-26 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10470.1 | 9e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco009157.1 |