PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco008435.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 332aa MW: 35788.8 Da PI: 7.4737 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.9 | 4.6e-22 | 80 | 124 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kri ++ rqv fskRr+g++KKA+ELSvLC+a++av++fs+ gk Aco008435.1 80 KRIASEEARQVCFSKRRAGLFKKANELSVLCGADIAVVVFSPAGK 124 799****************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.0E-34 | 72 | 131 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.96 | 72 | 132 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.51E-37 | 73 | 147 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-28 | 73 | 154 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-20 | 74 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-26 | 81 | 128 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-20 | 94 | 109 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-20 | 109 | 130 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MHYYVRRRYV ASVSHHSNDD EDEDNKQHRT AMMVASAAAA ESSNNNNNNN NNNNCSSSSS 60 KNTYNNKRKQ SLGRQKIEIK RIASEEARQV CFSKRRAGLF KKANELSVLC GADIAVVVFS 120 PAGKPFSFGH PSVPSVLRRF LSPDNPHNHN HSHSAADSTP AAAAAVAAEL NARQAELAAA 180 VEGGRRRRAA LEEALRARRA GMWDADVDAM ALPELEAFAA ALERLRAEAA LRADHLLMLD 240 AAAKGFGAES GGDLYYGGST SYGGGGGGLG LGFDWNNSNN NVIEGKVLML PPPPLPLPLP 300 LPLPPPPPFH HLHGPTHDLQ FEYDADQYGF Y* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
5f28_A | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
5f28_B | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
5f28_C | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
5f28_D | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU962654 | 3e-55 | EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020109333.1 | 1e-159 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A199UF56 | 4e-78 | A0A199UF56_ANACO; Agamous-like MADS-box protein AGL61 | ||||
STRING | XP_008788342.1 | 7e-55 | (Phoenix dactylifera) | ||||
STRING | XP_008805910.1 | 7e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-28 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco008435.1 |