PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco006054.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | WRKY | ||||||||
Protein Properties | Length: 318aa MW: 35417.9 Da PI: 6.2378 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 142 | 199 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers +dp+v+++tY+ eHnh+ Aco006054.1 142 DLWSWRKYGQKPIKGSPYPRGYYRCSSSkGCVARKQVERSPTDPTVLVVTYTAEHNHP 199 99************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-30 | 126 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.891 | 135 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-26 | 136 | 201 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-36 | 140 | 200 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-25 | 142 | 199 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEVNNNWDWD LNAVVRSCCF STPPAVTTFD PFPLLPTPVS EEEFANEEKG ELLLLSEIMR 60 GDQVSLVEHD ELCESFLFDI DHEKLFQKPQ PVVSFSTTTT LKEQSQRSTH QPLARSPRPK 120 RSQKKQHKRV VCHVPDDGLS PDLWSWRKYG QKPIKGSPYP RGYYRCSSSK GCVARKQVER 180 SPTDPTVLVV TYTAEHNHPM PTHRNSLAGT TRQKFPPPSP PPPPPPVSSS VSNCNMPYWS 240 PNSLSAEEVV FSPIATSTAS GRKDLGEEMD VDDMLFMGAD GMSDAASMEP FLMEKVGFGS 300 PFLCSRDMVG HRQSCSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-22 | 122 | 202 | 1 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-22 | 122 | 202 | 1 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020106188.1 | 0.0 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A199UDU5 | 0.0 | A0A199UDU5_ANACO; WRKY transcription factor 22 (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-51 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco006054.1 |