PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005650.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 341aa MW: 38304.3 Da PI: 6.8647

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005650.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	150	174	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 e+C+ f+r G C +Gd C aHg Aco005650.1 150 SGEPCPEFRRRGACERGDACDLAHG 174 569*****************88887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.9E-4	148	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.098	148	176	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-4	152	176	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.8	184	207	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.484	184	208	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MVISDVNYGN PTVHTPPWHV LEDRTALMGH CVPVSGVTCR GNTGAVSPFV LGEAALAALR 60 RSLVRPRRHY VDESYDSSSS LSSSEGGEEE EEEEWEEDSW EVYASTDGFR MYEFKVRACR 120 RRRSHNWTEC PFAHPGEKAA RRDPRRFTYS GEPCPEFRRR GACERGDACD LAHGVFECWL 180 HPARYRTQPC KDGTACRRPV CFFAHTPEQL RLLPQQQQQQ QQHQXHTACC PASKSRRRSM 240 KEKRIFSSSP RVEAAMAELR LCKSMPSSWK YRCNAAGFES TSTNTSSSSS SSSSSSVPST 300 IVMAPEQQYS WCAEDSVEEE SAAAAEMSAP NFDWVSDLLK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098453.1	0.0	zinc finger CCCH domain-containing protein 23-like
Swissprot	Q6L4N4	2e-61	C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBL	A0A199VEM3	0.0	A0A199VEM3_ANACO; Zinc finger CCCH domain-containing protein 23

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	7e-58	C3H family protein

Link Out ? help Back to Top
Phytozome	Aco005650.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]