PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005443.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 351aa    MW: 38695.2 Da    PI: 9.0667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005443.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.11.4e-13276301126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ + ++G+C+yG+ C+FaHg
  Aco005443.1 276 FKTELCNKWEESGECPYGEHCQFAHG 301
                  79***********************8 PP
2zf-CCCH192.5e-06314338125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  ykte Cr  +++  C+yG rC+F H
  Aco005443.1 314 YKTEVCRMVLAGDACPYGHRCHFRH 338
                  9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.6E-18270308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-10272307IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-8275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253275303IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-11309339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-8310339IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906313341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNAAMNKTRP DTMQQELVRP TNGDRRKPTI GSGAFASLDQ RLSSPPHLTN GADFFYPYSF  60
FYPTEDTPPN GLSSRSAARS SGNRYASNRK SAASRSRSRR RRTSTLFHRE GLEDHDLALC  120
AVHFRQEPPP PHQQQQRQLP PPPPPLIVPP PRAPPPPAPX GKPSPRIPPP PLVDEFRRLG  180
LGDPPAEASP TSVLGFQDPQ SRAAKAAGAA EKRVVLPKSI SIRSNGYLKL NQNQGCVGRG  240
GEREGRGERE DGEGEGEGEE PGKEGMELEV YNQGMFKTEL CNKWEESGEC PYGEHCQFAH  300
GIGELRPVIR HPRYKTEVCR MVLAGDACPY GHRCHFRHAL SPSDRLLLHP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-21276338466Butyrate response factor 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086588e-81AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
GenBankAP0029108e-81AP002910.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0707D10.
GenBankAP0149578e-81AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924174.12e-93zinc finger CCCH domain-containing protein 9
TrEMBLA0A199VM361e-128A0A199VM36_ANACO; Zinc finger CCCH domain-containing protein 39
STRINGXP_008800937.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-48C3H family protein