PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004938.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 427aa    MW: 49135.5 Da    PI: 9.5955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004938.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.6e-1748132898
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  s++l +   ++pkkf+++++g+      + l+ +sg  W++ l  +k  +++vl++GWk+Fv+a++++e+D ++Fk+ ++s+f   v +f+
  Aco004938.1  48 SYMLHQLHCSMPKKFVNHFNGQ--ICEHVDLKPPSGDIWRIGL--TKLANEIVLQSGWKDFVDAHRIEENDLLIFKYYESSSF--EVLIFD 132
                  45555545699*****877777..4558***************..*******************************9988999..888887 PP
2B343.75e-142873671694
                  EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt..kGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                    +p++fa++h  +  +  +++l+   + ++W   +  +++ ++++ +  +GWk+Fv +n+L++gD+++F+l+++ +  +++v
  Aco004938.1 287 KNIPRSFAAAHL-PR-RCEQIILKRpNQKKKWITSYVSTRQVRGVYGGiyGGWKHFVIDNNLQQGDICLFELMKNkKMLTMTV 367
                  57******9994.33.4458999994566*******88888888775566**********************99755555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-1925136IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-1430132No hitNo description
PROSITE profilePS5086313.1441134IPR003340B3 DNA binding domain
SMARTSM010191.9E-742134IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-1943139IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-1448132IPR003340B3 DNA binding domain
SMARTSM010191.9E-8275371IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-14285363IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-16286362IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-12287368IPR003340B3 DNA binding domain
CDDcd100171.22E-12289368No hitNo description
PROSITE profilePS5086311.448289371IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MKESCDKSCR ECREWGEHFY WNHLDKRKMH FFKFMVGDFA QCMVTLCSYM LHQLHCSMPK  60
KFVNHFNGQI CEHVDLKPPS GDIWRIGLTK LANEIVLQSG WKDFVDAHRI EENDLLIFKY  120
YESSSFEVLI FDGSGCEKAS SFFAKKNDPP VGEADEIPLE VINRKELIEL RSSGSSSEDD  180
AKPEITTKSL NGSKKMSKRI LRAGSGSGEK DAGTYVETLV HRKKYRVSPR KYAGPSKGVN  240
YGVKKDTPER DEHGQMPCNA PYFSLRSLQL SPSQHKKLTV FLFHLQKNIP RSFAAAHLPR  300
RCEQIILKRP NQKKKWITSY VSTRQVRGVY GGIYGGWKHF VIDNNLQQGD ICLFELMKNK  360
KMLTMTVYFG KEKDLQCPKQ HFLLPGKIHD PKVMRLINKT HKEETTSDLD KCDGRYPERA  420
HSTPSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6651843e-62KM665184.1 Ananas bracteatus clone 50278 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092907.10.0B3 domain-containing protein Os12g0592300
TrEMBLA0A199VWS30.0A0A199VWS3_ANACO; B3 domain-containing protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-28B3 family protein