PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000841.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 532aa    MW: 59751.6 Da    PI: 7.6424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000841.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071184205223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  Cg++F++   ++ H+r+H
  Aco000841.1 184 TCVECGRTFPSVKAMHGHLRSH 205
                  6*******************99 PP
2zf-C2H2157.2e-05362384123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k F+++  L  H+ +H
  Aco000841.1 362 YPCGVCNKIFPTHQALGGHMASH 384
                  99******************999 PP
3zf-C2H212.60.00042425447123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++Cg+ F +   L  H+r+H
  Aco000841.1 425 HKCKKCGQIFASGQALGGHQRKH 447
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.17183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141183210IPR007087Zinc finger, C2H2
SuperFamilySSF576677.33E-7184205No hitNo description
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
PfamPF139123.1E-5185205IPR007087Zinc finger, C2H2
SuperFamilySSF576677.33E-7357384No hitNo description
SMARTSM003550.0097362384IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-7362385IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868362389IPR007087Zinc finger, C2H2
PROSITE patternPS000280364384IPR007087Zinc finger, C2H2
SMARTSM003550.068425447IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-6425448IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118425447IPR007087Zinc finger, C2H2
PROSITE patternPS000280427447IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MERTDSPNLS IRTICVDRVH ELISCTALQN PAPHPSTAPL HGARDDVVDR VRRRCNFDVV  60
LFRSVPTLWL FYIVKFIRDW LASLYTISEM NPRRQNEPAL FKSSNKKVAV AREKNEGEKS  120
DDTNFERASN VENDDMGAYN NTSQHYLGVD NSHLSLQNKE NLNNEALADE FKSNLNANHK  180
EVPTCVECGR TFPSVKAMHG HLRSHPNRGY KGAVPPPNMA KKQLVQPSST SAPQVEIPAS  240
KRPVRPRRDP NRIIDPTTEA INAAFMLVYL SIETSKQSAS PSHENETYRS PKRKRESIED  300
DFRVIHDKEE TANEGSEGDD HFGGHQIDCD YDGEYIEESH LQPLSNLIEK RKKKAKKSAG  360
SYPCGVCNKI FPTHQALGGH MASHNKGKNI MDEAFTANEA NEVELSHVEK LTVETASKGP  420
NLGIHKCKKC GQIFASGQAL GGHQRKHYPL PDHSQKECNV SLNQDRKKSN VAPDHGWKKR  480
LPNNSQKESN DVSDDRRKEC NDVPDHGQEK SNVMFNIDLN KSVDFNQDLP S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083375.10.0zinc finger protein ZAT3-like
TrEMBLA0A199VD530.0A0A199VD53_ANACO; Zinc finger protein ZAT4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1943657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-15zinc-finger protein 2