PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000309.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family G2-like
Protein Properties Length: 406aa    MW: 43163.4 Da    PI: 5.3107
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000309.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53.1e-28174228156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++
  Aco000309.1 174 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNVASHLQKYRSH 228
                  5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.055171230IPR017930Myb domain
SuperFamilySSF466891.97E-18172231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-27172231IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26174228IPR006447Myb domain, plants
PfamPF002494.2E-8177226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLAVSPLRSS HGGERGCDGD VGGSGFVDDF SIIGDGGDDM LDDIDFSELF VGLEDGDILP  60
DLEVDPAEIL AELSACEPSS VATRTSAEEG LVREEEYNKG GGGGGEEEEE DKEVVTMAEM  120
RRREGDASTD GNAVAADTRS SSSLSSSSSE GDNRRRKSPS AAAATAKNSQ GKRKVKVDWT  180
PELHRRFVQA VEQLGVDKAV PSRILELMGI DCLTRHNVAS HLQKYRSHRK HLLAREAEAA  240
QWSQRRQMYG VGGPSGGVKR DVNPWLAPTI GFPPPPPVPH FRPLHGAHSL TQGTPCFPQA  300
LPVMRFPASA VPAVIPHPMY RPIPPPTTAK NASSQVPLDP HPSKESVDAA IGDVLAKPWL  360
PLPLGLKAPS TESVMMELQK QGISKVPPTC GSSCGNYSVL TTTAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-17171226257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100867.10.0probable transcription factor GLK1
SwissprotQ5Z5I43e-82GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A199VV790.0A0A199VV79_ANACO; Putative transcription factor GLK1
STRINGXP_008783138.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-66GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]