PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco000277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | GRF | ||||||||
Protein Properties | Length: 613aa MW: 64689.5 Da PI: 7.9778 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78 | 9.1e-25 | 237 | 281 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Aco000277.1 237 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKHVEG 281 79****************************************986 PP | |||||||
2 | QLQ | 59.7 | 8.5e-21 | 168 | 203 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 ++FT++Q+++L++Q+l+yKy++an+P+Pp Ll + + Aco000277.1 168 GPFTPTQWMELEHQALIYKYIVANAPIPPSLLIPFR 203 59******************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.2E-12 | 168 | 204 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-15 | 169 | 201 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.897 | 169 | 204 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.123 | 237 | 281 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-20 | 238 | 280 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MDLGGGGGGG GGGVAMAMDG LVGSSSESGN GVGVGVGVGV GVGFFSPLDS GSSFLKHGRS 60 NGGGEESEWR LLKMARTEET PLAPTTKEAS STSSASSSSS STCSLLRSHS HSLFSDGEQM 120 LSFSSSPANT NGGAFPYYSS APSCFRNAGL GSGSSNGSMH GVLARVRGPF TPTQWMELEH 180 QALIYKYIVA NAPIPPSLLI PFRRSLNPSG FPPFSSFGPT TLGWGSFHLG YSGSNADPEP 240 GRCRRTDGKK WRCSRDAVPD QKYCERHMNR GRHRSRKHVE GQSIGHHAAA KSIAAAAAAA 300 AASSSQTASS AAVSCGGGGG GASSTTTTTT TTTTTTTNLS IARQQQNTKS LGLSMTDCSA 360 DLNRMLMSKE NVSDRAHDSQ NLSMLTSVNQ KPIIDAFLPT SKRQPYNPFE QPLMNSPRSS 420 FSENLSLIPP TNKLDEHTQL LPLHHFIDDW SKTRSWSEVE EMQCDRTQLS ISIPMAPSDF 480 SSSSSSPNHE KLTLSPLRLS REFGPITIES SQRQHANWIP ISWEAASIGG PLGEVLTNTN 540 NSNITTPKGQ SKNCSESSLN LLTDGWDSSS SPRLESSPTG VLQKSNNFCS LSSSTGSSPR 600 QENHNPLTIP SL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020099743.1 | 0.0 | growth-regulating factor 6-like | ||||
Swissprot | Q6AWY3 | 1e-120 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A199UTZ1 | 0.0 | A0A199UTZ1_ANACO; Growth-regulating factor 6 | ||||
STRING | XP_008790288.1 | 1e-180 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-51 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Aco000277.1 |
Publications ? help Back to Top | |||
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