PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn370131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 190aa MW: 21276.1 Da PI: 6.8569 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 57.9 | 2.3e-18 | 14 | 62 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v Y+eC +N Aa+ G ++ D C Ef+ s g + l C+ CgCHRn+HR+e++ Achn370131 14 VSYRECHRNFAARRGHYVGDACAEFVVS-G-----DDLLCSSCGCHRNYHRKEEV 62 89*************************9.4.....45***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-9 | 14 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.6E-17 | 14 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 15.188 | 16 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.82E-11 | 109 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 110 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.0E-20 | 116 | 172 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MANNDNVRRC ATIVSYRECH RNFAARRGHY VGDACAEFVV SGDDLLCSSC GCHRNYHRKE 60 EVVVEVEPGI DQVLRQMAVA APLPQLPILT AHIPLPPPPE DDIPGDGEIE QELKPRKRDR 120 SRLTQAQREM MRLYAGRLGW SLQGHNEEEL LRFCSDIGII PQVFKVWMNN HRRKYANAGE 180 TSAATGGEA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10889 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-26 | homeobox protein 22 |