PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn367271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 426aa    MW: 48834.4 Da    PI: 5.1155
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn367271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.75.9e-36151052101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ +++++sws++++sf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++ll++i+
    Achn367271  15 FLTKTYEMVDDPVTNSIVSWSQSSHSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLKNIH 102
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    Achn367271 103 RRK 105
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-39599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6111104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.3E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MMDASNSGSN APAPFLTKTY EMVDDPVTNS IVSWSQSSHS FIVWNPPEFA RDLLPKYFKH  60
NNFSSFVRQL NTYGFRKIDP DQWEFANEEF IRGQRHLLKN IHRRKPIHSH SAQNSSVPLN  120
DSERQELEEE IDRLKRENCF LQLELQTHKQ EKQGYEIQVQ SLGERLKNIE HRQRQMMVFL  180
AQELREPRFA FSHMQLSENQ SKKRRLLMSN HLYDEANMVE NQILIFQKEN PDATCPILNL  240
ELIEKMESSL NFWENFLHGV GQTSSEEMSD FGMLPQPSSV TIMEMQESSR DSDVNVCPLS  300
PVLHPSSPDS RDVHSSPDLA RSSSHLESPR ISPIGLSVDV GPKSLGIDVN SKPATTSPAV  360
VTGVNDIFWE QFLTETPGSS HTQEVQSERR DINTIKSENN QSWWNTDNVD NLTEQMIHLT  420
PAENT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-27910424129Heat shock factor protein 1
5d5v_B8e-27910424129Heat shock factor protein 1
5d5v_D8e-27910424129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071580.10.0heat stress transcription factor A-4b-like
RefseqXP_028071581.10.0heat stress transcription factor A-4b-like
TrEMBLA0A2R6QXA80.0A0A2R6QXA8_ACTCH; Heat stress transcription factor A-4b like
STRINGXP_010242159.11e-176(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-92heat shock transcription factor A4A