PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn340941

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 270aa MW: 29491.8 Da PI: 5.644

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn340941	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.1	9.1e-09	96	135	12	51
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 NReA r++R++Kka+++ Le++v L + N++L k+l+ Achn340941 96 GNREAVRKYREKKKARTASLEDEVVRLRTLNQQLMKRLQG 135 5**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.8E-13	83	153	No hit	No description
SMART	SM00338	2.4E-8	84	152	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	6.5E-13	86	142	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.36E-7	90	135	No hit	No description
CDD	cd14686	4.19E-12	97	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDDGELDFSN QEVFSGSNLG DLPSSCSMDS FFDEIFKDTH ACCHTHTCNP PGPDSTHTHT 60 CYHVHTKIVS GPAEDKVSTD DTAESSEKKS RKCPLGNREA VRKYREKKKA RTASLEDEVV 120 RLRTLNQQLM KRLQGQAALE AEIARLKCLL VDIRGRIEGE IGSFPYQKPV RSGNMYQNLS 180 NPNLPGAYMT NPCNMQCDDD QVYCLQTGVE EKNGEGLLLN GQGFSGCEFE NLQCLGNQNT 240 GLKEVPGCGI GNVSSTVNSS GGNKRKGET*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028068229.1	1e-163	basic leucine zipper 23-like
Swissprot	Q8GTS2	1e-118	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2R6RBN8	0.0	A0A2R6RBN8_ACTCH; Basic leucine zipper like
STRING	VIT_03s0038g02420.t01	1e-151	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-115	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]