PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn313581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 161aa MW: 18417.1 Da PI: 10.6845 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.1 | 9.6e-23 | 57 | 119 | 1 | 63 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 +W+++e+++Li++r e+e+++ +k++k+lWe vs++mre g++r++ qCk+kw+ l +ryk+ Achn313581 57 QWSHRETRDLIAIRAELERDFTVAKRNKTLWEVVSARMRELGYRRTADQCKCKWKTLVNRYKE 119 7************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.445 | 50 | 114 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.2E-17 | 57 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-4 | 57 | 116 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 2.34E-27 | 57 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MNFSGGGGRG SVGGGRENDF LQMMMMPLPL HRNPMPEAAE IGGGDGEFPK RDERVLQWSH 60 RETRDLIAIR AELERDFTVA KRNKTLWEVV SARMRELGYR RTADQCKCKW KTLVNRYKEG 120 GVELTLKTRV TRRGNFPPYK QAQKLELQGE GTFHLINRPR * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 14 | GGRGSVGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028064442.1 | 2e-48 | trihelix transcription factor GT-3b-like | ||||
Refseq | XP_028064443.1 | 2e-48 | trihelix transcription factor GT-3b-like | ||||
Refseq | XP_028064444.1 | 2e-48 | trihelix transcription factor GT-3b-like | ||||
TrEMBL | A0A2R6PMM4 | 5e-82 | A0A2R6PMM4_ACTCH; Trihelix transcription factor GT-3a like | ||||
STRING | XP_010276957.1 | 5e-37 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10133 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 1e-22 | Trihelix family protein |