PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn311481

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ARR-B

Protein Properties

Length: 525aa MW: 58241.9 Da PI: 6.2667

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn311481	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.4	3.4e-28	194	247	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k rl+W++eLH++Fv+a+eqLGG kA+Pk+ile+m+v+gL++e+v+SHLQk+R Achn311481 194 KHRLVWSKELHNKFVDALEQLGGGSKAVPKKILEVMNVPGLSRENVASHLQKFR 247 68**************************************************** PP
2	Response_reg	80.7	4.9e-27	29	137	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + ++l+ ++l k +y +v+++++++eale+l++++ +Dl+++D+em +mdG++ll++i e ++p+i+++a+++ e + + ++ Ga Achn311481 29 VLAVDDNVVCLKLIVTLLIKCRY-KVTATTKPTEALEMLRKNKesYDLVITDVEMLDMDGFQLLQTIGIEM-DVPVIMISANDDTESVMKGVRHGAL 123 799******************.***********888889******************6644.8******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l+Kp+ +eel + Achn311481 124 DYLVKPVRIEELKN 137 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	7.12E-34	25	150	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.9E-39	26	179	No hit	No description
SMART	SM00448	2.0E-29	27	139	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	41.211	28	143	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	4.7E-23	29	137	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	5.04E-28	30	142	No hit	No description
PROSITE profile	PS51294	14.043	191	251	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-18	192	252	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-26	192	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	194	248	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	197	246	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MSVNDQDLAN PNPYLEINAK TDFPEGLRVL AVDDNVVCLK LIVTLLIKCR YKVTATTKPT 60 EALEMLRKNK ESYDLVITDV EMLDMDGFQL LQTIGIEMDV PVIMISANDD TESVMKGVRH 120 GALDYLVKPV RIEELKNIWQ HVVRKNLLEQ AKSGTGKVTM DQNSMSSKRQ RDKEKEKEEE 180 TKAQSDEELS APKKHRLVWS KELHNKFVDA LEQLGGGSKA VPKKILEVMN VPGLSRENVA 240 SHLQKFRNLL KKDSKNPEMN LESENNIDPS QPNRHISDLT TLPSNNLGLN NIGDPGMAAL 300 FGSQNQTFSD YLANRRQVHQ NSLLLPHVAD QVRPNVQNLV FGNFPPNPIS TWNSFPRPEL 360 NGMRLHSYVP PSFSAGQTDP STMPVGLVPY SRPPGTFNLV QMLGDGSTQL SQISQPCPLA 420 MLGPSSSQGQ NERRNLVNFN GRGETGGFAF EIRGQITDES SRIGQFVQNQ PSENTERERN 480 GNYNCSSPDD DLSAMVRQAT VYLAFTANLA AFQASLLAVT VASR*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MSVNDQDLAN PNPYLEINAK TDFPEGLRVL AVDDNVVCLK LIVTLLIKCR YKVTATTKPT  60
EALEMLRKNK ESYDLVITDV EMLDMDGFQL LQTIGIEMDV PVIMISANDD TESVMKGVRH  120
GALDYLVKPV RIEELKNIWQ HVVRKNLLEQ AKSGTGKVTM DQNSMSSKRQ RDKEKEKEEE  180
TKAQSDEELS APKKHRLVWS KELHNKFVDA LEQLGGGSKA VPKKILEVMN VPGLSRENVA  240
SHLQKFRNLL KKDSKNPEMN LESENNIDPS QPNRHISDLT TLPSNNLGLN NIGDPGMAAL  300
FGSQNQTFSD YLANRRQVHQ NSLLLPHVAD QVRPNVQNLV FGNFPPNPIS TWNSFPRPEL  360
NGMRLHSYVP PSFSAGQTDP STMPVGLVPY SRPPGTFNLV QMLGDGSTQL SQISQPCPLA  420
MLGPSSSQGQ NERRNLVNFN GRGETGGFAF EIRGQITDES SRIGQFVQNQ PSENTERERN  480
GNYNCSSPDD DLSAMVRQAT VYLAFTANLA AFQASLLAVT VASR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-17	190	254	1	64	ARR10-B

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028088032.1	1e-138	two-component response regulator ARR18-like
TrEMBL	A0A2R6R510	0.0	A0A2R6R510_ACTCH; Two-component response regulator like
STRING	XP_010259817.1	3e-93	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15489	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	8e-78	response regulator 10