PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn281761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28311.2 Da PI: 8.8075 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 4e-13 | 92 | 138 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RRd++N++f +Lr+++P+ K++ a+ L Av YI +L Achn281761 92 MNHVEAERQRRDKLNHGFYKLRSVVPNV-----SKMDRASLLSDAVAYIEEL 138 68*************************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-17 | 80 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.72E-13 | 89 | 143 | No hit | No description |
PROSITE profile | PS50888 | 16.361 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 92 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-16 | 93 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-14 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDEINSSSSS QSFLFQGFSQ DPFPNRNLSL QDFDIYGEPI GAYAETQLKG DLKREMNITV 60 QSFFESGPSD HEGHVRCKNR GKKATMGQEK LMNHVEAERQ RRDKLNHGFY KLRSVVPNVS 120 KMDRASLLSD AVAYIEELKA KIKILEANVG QRKHKACVMD RHGNYQSTST WSGEVGVKIL 180 GSEALIRVQC ADVNFPSARL MGVMRDLELQ IHHASVSKVK EVMLQDVVVR VPHGFTTEEA 240 LRTAILTRFQ V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
5gnj_B | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
5gnj_E | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
5gnj_F | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
5gnj_G | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
5gnj_I | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
5gnj_M | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
5gnj_N | 3e-23 | 86 | 142 | 1 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028075552.1 | 3e-78 | transcription factor MYC3-like | ||||
TrEMBL | A0A2R6QMU8 | 0.0 | A0A2R6QMU8_ACTCH; Transcription factor like | ||||
STRING | VIT_02s0025g02610.t01 | 7e-68 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-46 | bHLH family protein |