PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn280391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Dof | ||||||||
Protein Properties | Length: 223aa MW: 23524 Da PI: 7.4339 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.5 | 3e-38 | 23 | 81 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprC+stntkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+++++ Achn280391 23 PEQLPCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNVPVGGGTRNKNTN 81 6789**************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-24 | 21 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-32 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.966 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MPPETSDRRP VRMQHGGAHP PEPEQLPCPR CESTNTKFCY YNNYNLSQPR HFCKSCRRYW 60 TRGGTLRNVP VGGGTRNKNT NKRSRTAAAT SSSSSSSLPE REPANPITVL PGIKTHNNTA 120 PLYADVDLNE NVPEADSYAS FLNPHGGGLF PLGGFGFGFG VGTGIWHMED VSGGNGGGGG 180 GVSGAEPGCN AWQVGSGESE LADVDCFGWP DLAISTPGKG LK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857251 | 5e-47 | DQ857251.1 Glycine max Dof2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061031.1 | 1e-83 | dof zinc finger protein DOF3.4-like | ||||
TrEMBL | A0A2R6RMY2 | 1e-120 | A0A2R6RMY2_ACTCH; Dof zinc finger protein like | ||||
STRING | VIT_18s0001g11310.t01 | 4e-62 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-33 | DOF zinc finger protein 1 |