PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn273201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YB | ||||||||
Protein Properties | Length: 219aa MW: 24237.2 Da PI: 6.3411 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 152.3 | 8.9e-48 | 41 | 134 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +d+++P an++rim++ lP +aki+++ak+tvq+cvsefi f+tsea+d+c+re+rkt++++dllwa+a lGfedy+epl+++l++yre+e+ Achn273201 41 PHDQYMPAANIIRIMRRGLPPHAKIADEAKDTVQHCVSEFINFITSEANDRCHREQRKTVTAEDLLWAMARLGFEDYIEPLTLFLNRYREMESG 134 579****************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-43 | 40 | 139 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.87E-35 | 43 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.6E-24 | 45 | 109 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.3E-15 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 2.3E-15 | 92 | 110 | No hit | No description |
PRINTS | PR00615 | 2.3E-15 | 111 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MLDAETQIDT LESYSALTGA HGAGNSSNIN REQPILLHDR PHDQYMPAAN IIRIMRRGLP 60 PHAKIADEAK DTVQHCVSEF INFITSEAND RCHREQRKTV TAEDLLWAMA RLGFEDYIEP 120 LTLFLNRYRE MESGRTSMHG EPFVKCTLDL GLPPGPTNYG LKAWPAGQAH GVFDAHGAMM 180 MNGMNNYYRD NHGGGSSSSG QAAALPGFDP YVQFKRSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-47 | 40 | 130 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028073480.1 | 4e-73 | nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A2R6QD15 | 1e-152 | A0A2R6QD15_ACTCH; Nuclear transcription factor Y subunit B-9 like | ||||
STRING | Gorai.004G033600.1 | 2e-58 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 9e-55 | NF-YB family protein |