PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn266751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 29469.6 Da PI: 8.8711 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.6 | 5.6e-07 | 102 | 121 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r nL+ H+ Achn266751 102 FSCHVCDKTFNRYNNLQMHM 121 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.53E-6 | 97 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 100 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.616 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.091 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 149 | 181 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 186 | 206 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEVSDISSGV HTDDSEKFHV LPNRAQNFLE PLPLLSCLQT PLEESPKPFD DERDDITVAL 60 HIGLPNCTDG FVNSSEKKEV KVEAAQYWIP TPAQILVGFT NFSCHVCDKT FNRYNNLQMH 120 MWGHGSQYRR GPDSLKGSQP RAMVGVPCYC CEEGCKNNIA HPRAKPLKDF RTLQTHYKRK 180 HGAKRFACRK CGKCLAVKGD WRTHEKNCGR RWLCLCGSDF KHKRSLKDHI RSFGSGHGPF 240 PPSYDGLEMR KNGVRSFFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028120523.1 | 1e-146 | protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q8VWG3 | 1e-103 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A2R6Q0F5 | 0.0 | A0A2R6Q0F5_ACTCH; Protein TRANSPARENT TESTA like | ||||
STRING | EOY15971 | 1e-128 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13264 | 15 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 1e-105 | C2H2 family protein |
Publications ? help Back to Top | |||
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