PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn264951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 373aa    MW: 41323.2 Da    PI: 10.322
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn264951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.82.2e-16106189186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  v +L+ea++ ++   +r+klk+++We+v+k++  r++g    ++++qCk+k+e+++kry+ + + ++       s++p+f +l+
  Achn264951 106 EWSEGAVSTLLEAYEAKWVLRNRAKLKGQDWEDVAKHVslRAHGTksPKTQTQCKNKIESMKKRYRSESAAAEA------SSWPLFPRLD 189
                 5*************************************99888873367******************9999886......47****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-19104189No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEWVTKPRDK PPPSSVDVMV GFRSTLTAKN TPETKPNNKI KATIPTKVKT PPKSTKIGAI  60
LDLRYWDIHI GQYSPIGSNI DIKDSPPKPP PLTTGGSGGD RLKRDEWSEG AVSTLLEAYE  120
AKWVLRNRAK LKGQDWEDVA KHVSLRAHGT KSPKTQTQCK NKIESMKKRY RSESAAAEAS  180
SWPLFPRLDL LLRGSAPTQP PVTNSPLVLI EPFLPPPLPP PLPHGIAQNS HGSNGVDRVA  240
KEDGVGTKLS EHESDKNPPV DTDSSTPALY SDKEKMKSKS LKTRADKKKK RREEEWEVGE  300
SIRWLAEVVV RSEQARMDTM REVEKMRAEA EAKRGEIDLK RTEILANTQL EIARLFAGVG  360
KGIDSSLRIG RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291KKKKRR
2287291KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027168145.11e-136formin-1
TrEMBLA0A2R6R9T70.0A0A2R6R9T7_ACTCH; Trihelix transcription factor
STRINGcassava4.1_011546m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.19e-95sequence-specific DNA binding transcription factors