PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn241181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 334aa    MW: 38571.5 Da    PI: 6.66
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn241181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.56.7e-46621812128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 ppG+rF Ptd el+v+yL+kkv +k+l+  + ik+v++y+++P++L      ++++wyfFs+rd+ky++gkr+nra+ +gyWkatg dk++++ k+e+v
  Achn241181  62 PPGYRFCPTDTELIVYYLQKKVLNKPLPH-DKIKDVNLYSYNPQHLT-----GDNDWYFFSPRDRKYPKGKRPNRAAGDGYWKATGIDKSIKH-KNEVV 153
                 9***************************9.88**************7.....899**************************************.8999* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 g +k+L+fy g+ap+g+kt+W+m+ey++
  Achn241181 154 GYRKSLAFYLGKAPNGNKTNWIMKEYTV 181
                 **************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-5458208IPR003441NAC domain
PROSITE profilePS5100552.20361208IPR003441NAC domain
PfamPF023651.0E-2462180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSSFSESPTV EVDDQQSKPN YPVITQINDI MPTNIFHHQY QHHQYQEEEE EEEEEEEEQS  60
FPPGYRFCPT DTELIVYYLQ KKVLNKPLPH DKIKDVNLYS YNPQHLTGDN DWYFFSPRDR  120
KYPKGKRPNR AAGDGYWKAT GIDKSIKHKN EVVGYRKSLA FYLGKAPNGN KTNWIMKEYT  180
VVDAPPVTKK SENDMKLDNW VLCRIYQKNK SKKKEQDDEN HDSGRHSPNL FNIPPNVPQN  240
VPQALENNVP QVNLYINGIG NSNTNGFVAN NFNNFGAHQH HHQQPTSVNS GAQQFGFGHH  300
LGHSNQNISS QEYLPFYGLD SMSRDLFEHS KWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-53512147171NO APICAL MERISTEM PROTEIN
1ut4_B4e-53512147171NO APICAL MERISTEM PROTEIN
1ut7_A4e-53512147171NO APICAL MERISTEM PROTEIN
1ut7_B4e-53512147171NO APICAL MERISTEM PROTEIN
3swm_A6e-535121410174NAC domain-containing protein 19
3swm_B6e-535121410174NAC domain-containing protein 19
3swm_C6e-535121410174NAC domain-containing protein 19
3swm_D6e-535121410174NAC domain-containing protein 19
3swp_A6e-535121410174NAC domain-containing protein 19
3swp_B6e-535121410174NAC domain-containing protein 19
3swp_C6e-535121410174NAC domain-containing protein 19
3swp_D6e-535121410174NAC domain-containing protein 19
4dul_A4e-53512147171NAC domain-containing protein 19
4dul_B4e-53512147171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021802976.11e-66NAC domain-containing protein 102-like
RefseqXP_021810650.19e-67NAC domain-containing protein 102-like
TrEMBLA0A2R6PFL90.0A0A2R6PFL9_ACTCH; NAC transcription factor
STRINGEMJ156853e-65(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-56NAC-like, activated by AP3/PI