PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn234221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 723aa    MW: 78378 Da    PI: 6.6634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn234221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07315335526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  Achn234221 315 PCPDFRK-GACRRGDMCEYAHG 335
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.8E-1736164IPR020683Ankyrin repeat-containing domain
CDDcd002049.78E-1537163No hitNo description
SuperFamilySSF484034.04E-1737164IPR020683Ankyrin repeat-containing domain
SMARTSM0024816003868IPR002110Ankyrin repeat
PfamPF127969.3E-1047152IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.42285193IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003385115IPR002110Ankyrin repeat
PRINTSPR014157.9E-586101IPR002110Ankyrin repeat
PROSITE profilePS5008812.022120155IPR002110Ankyrin repeat
SMARTSM002480.0049120152IPR002110Ankyrin repeat
PRINTSPR014157.9E-5139153IPR002110Ankyrin repeat
SMARTSM003564.0E-6310336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4314337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582315337IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5315335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4343373IPR000571Zinc finger, CCCH-type
SMARTSM0035639345368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MCGGPDRSKS TSSSSSSANE EHKPSTKTMS QLTVDTNDSF SSLLDLAANN DFEGFKQLME  60
HDVSAIDEVG LWYGRKKGSK QIVLGHRTPL MVAAMYGSVD VLKLILSQPD VDVNRSCGLD  120
KTTALHCAVS SGSVKAVDVV KVLLSAGADR NSMNADGLRP VDMIVVPPKL PGIRASLEEL  180
LLNNASDGSV SEHNLWASVR NSSSRSNSTT FSSVNGSPCS PSDLVASTMT TNLNDLSVNG  240
LAANSVLEKK EYPVDPSLPD IKNSIYSTDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN  300
ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCERR  360
VCFFAHTPEE LRPLYVSTGS AAPSPRSNAT SVSVMDMLSL LPSSPSSLMS PSPFIQPMSP  420
SAIGISQTSL AWPQPNVPTL SLPGNNLQSS RLRSSLSARD IPPEDLNMLL DFDAQQQVLN  480
DMSCFSQARL NSVSLNRSCL SKTLNPSNLE ELFSAEITTS PRYSDQAAVS GVFSPSHKSA  540
VLSQFQQQSL LSPKNIEHPL LQASLGVSSP RGMLMSPRSV EPLSPMSAQL SAFARREKQQ  600
QQLRSLSSHD LGCNTNGSSI SPVNSWSKWG SPNGKVDWSV NGAEQGRSSF ELNDNGQEPD  660
LSWVQSLVKE SPPEMKDNKL AVTVSGIVSS GAALKSNSQV ESVDHSVLGA WLEQMQLDQL  720
VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380GRKKGSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281461.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_021281462.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_021281463.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2R6RD610.0A0A2R6RD61_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEOX966900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]