PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn225961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 472aa    MW: 52635 Da    PI: 7.8783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn225961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000384667223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +C+ C+k Fs+   L  H+r+H
  Achn225961 46 VCSVCNKGFSSGKALGGHMRVH 67
                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-44467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.17E-74467No hitNo description
SMARTSM003550.0724567IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-94567IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.724572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-7101128No hitNo description
SMARTSM003550.29106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286106133IPR007087Zinc finger, C2H2
PfamPF139122.7E-5108130IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
PfamPF139122.3E-5370393IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-6370393No hitNo description
SMARTSM003550.28371393IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014371398IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-6436463No hitNo description
SMARTSM0035529441463IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-8441464IPR007087Zinc finger, C2H2
PROSITE patternPS000280443463IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDHDPENHQP EGKLWIKLKI PKIEEEGING EDRIGSGPKK NNEPRVCSVC NKGFSSGKAL  60
GGHMRVHVQQ QAHHKDETPP KKSKATTNYH CRNASESSQS PRIDKPTCTL CGKDFWSMKS  120
LFGHMRCHPE REWRGIQRPL LARTKDSSSS SSVSGVDRNP NQRIDSCGVV DLSGCLSGWA  180
VRDSRGRGAL ADGSVTDENE DEDEEDAKLR AAVHDLMRLA RGSSLDSGLT YKDRIQEYKA  240
TNRYSLTKQP EIQAKNWVFE TKKRRIEVGY KRDWPVMKVK IDESEKDSET EMIPAKWVCG  300
DLQIDDELGC ENSDGTVPSE ELIKNYKCES NTSTRPVMMK SKKKRKKLKL RDLESAPMVE  360
EELPPPPPSR YKCSTCNKCF STHQALGGHS AYHNKVHSCH TEVESSSGAQ GEESEANGIA  420
RADETKDNEG SSSSKQAESM HWCKICIKTF LTGQALGAHK RCHWVGPAEA P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KKRKK
2344350RKKLKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-17C2H2 family protein