PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn225631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 304aa    MW: 33840.5 Da    PI: 8.4111
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn225631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.6e-18214248135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Achn225631 214 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 248
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.0E-16208258IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227212244IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-13212246IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-14212272No hitNo description
CDDcd002022.03E-12213260No hitNo description
PfamPF003208.9E-16214248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVYEMCIGKG ESKCKRRTSN IFRTVGYPST YNGRGSICIF HSLLKYGCVR YVGDGVFSRR  60
HLLDFSNDEI FSGAAAADSD LHRFPPYGST YFPGGAHYSA QNLTQSTNFT DDLCVPSDDV  120
AELEWLSNFV DDSFTDFSPS EFAGSGNHQP ETPFHGRSRS KRSKATSTNR EQKENAASAN  180
SGKKRESTSS SSGLTGDISS PSPLENSPEV IRRCTHCASE KTPQWRTGPL GPKTLCNACG  240
VRFKSGRLVP EYRPAASPTF VLTEHSNSHR KVMELRRQKE VVRQEQQQEE PQLFRRPHNF  300
EVC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6239598e-56AB623959.1 Camellia sinensis DNA, SSR marker, MSE0297.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277959.12e-80PREDICTED: GATA transcription factor 4
SwissprotO497415e-67GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A2R6R9A01e-177A0A2R6R9A0_ACTCH; GATA transcription factor
STRINGVIT_15s0021g02510.t017e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.19e-53GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]