PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn225201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 28856.8 Da PI: 8.8272 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.2e-18 | 71 | 125 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L +rqV vWFqNrRa+ k Achn225201 71 RKKLRLSKEQAAVLEETFKEHSTLKPKQKVSLANQLNLRTRQVEVWFQNRRARTK 125 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.6 | 9.2e-40 | 71 | 160 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++Kv+la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr+yd+l+een+rL+ke +eLr +l Achn225201 71 RKKLRLSKEQAAVLEETFKEHSTLKPKQKVSLANQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCYDNLTEENRRLQKEANELR-AL 160 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.1E-16 | 2 | 44 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 57 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-14 | 69 | 131 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-17 | 70 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.7E-16 | 71 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.68E-14 | 71 | 128 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 8.9E-11 | 127 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.0E-24 | 127 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDARSNLRGI DVNRRPSRVA ECEDEVGVSS PNSTISSVSG KREENGTERG WATGGCGGEE 60 EDDDGGDTAE RKKLRLSKEQ AAVLEETFKE HSTLKPKQKV SLANQLNLRT RQVEVWFQNR 120 RARTKLKQTE VDCEYLKRCY DNLTEENRRL QKEANELRAL KLSPQTYMHM NPPTTLTMCP 180 SCERVAVLPP PSPAAAIGIT RHLMPALHEA HGSHSPKFLL FLFTSPTFIK QEHRSSITKL 240 HKFLTVSQAI NVLVIH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027158306.1 | 1e-91 | homeobox-leucine zipper protein HAT4 isoform X2 | ||||
Swissprot | P46602 | 6e-87 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A2R6R981 | 1e-148 | A0A2R6R981_ACTCH; Homeobox-leucine zipper protein | ||||
STRING | VIT_00s0299g00100.t01 | 5e-91 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 2e-72 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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