PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn182861

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 273aa MW: 31263.5 Da PI: 8.4183

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn182861	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164	5.3e-51	3	124	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 +rFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s +++ vg+k Achn182861 3 VRFHPTDEELIMYYLRNQATARPCPV-SIIPEVDIYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS-GSKYVGIK 99 7***********************.89***********99999*************************************.999* PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k Lvfykg+ pkg ktdW+mheyrl Achn182861 100 KALVFYKGKPPKGIKTDWIMHEYRL 124 *********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	57.118	1	151	IPR003441	NAC domain
Pfam	PF02365	2.4E-24	3	124	IPR003441	NAC domain
SuperFamily	SSF101941	1.2E-61	3	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVVRFHPTDE ELIMYYLRNQ ATARPCPVSI IPEVDIYKFD PWELPEKAEF GENEWYFFTP 60 RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SGSKYVGIKK ALVFYKGKPP KGIKTDWIMH 120 EYRLSDSIRQ TNKQSGSMRL DDWVLCRIYK KKSTIGRVLD PKVEDLGAQI VATNDASDSQ 180 MLKIPRIYSL SHLWQLDCLG SLPQLLNENS YHPDTDYQTT MGNAGNCSGG IEKCQFGDQF 240 PYQYMDSVKF QASHSSHAVN QPIFVNPVFQ FQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-66	4	153	20	170	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028125229.1	1e-161	NAC domain-containing protein 2-like
Swissprot	K4BWV2	1e-124	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A2R6RFE9	0.0	A0A2R6RFE9_ACTCH; NAC transcription factor
STRING	VIT_01s0026g02710.t01	1e-133	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-101	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]