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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn181261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 177aa MW: 19726.6 Da PI: 9.558 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 6 | 58 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ + +E++RR+++++ ++L +l+P+ +s+ +s a+ L +A +YIk+L+ Achn181261 6 RTDRKTIEKNRRNHMKDLCSKLHSLVPHhH---TSREaMSLADHLGEASNYIKNLE 58 677889**********************66...66667***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.725 | 4 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-13 | 4 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.18E-7 | 6 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 6 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-8 | 7 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-4 | 10 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MEHNPRTDRK TIEKNRRNHM KDLCSKLHSL VPHHHTSREA MSLADHLGEA SNYIKNLEKH 60 LEKMRQKKDR LTGIAKQNIA SMSCAANVGL RPPQVEVHEM GSALEVVLVT GLNYKFMFKE 120 TIRLLHEEGA EIVNAGFSVV DDTVFHTIHS KVGESGLGSG AARISERLKK FAHDAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028071437.1 | 3e-83 | transcription factor bHLH162-like isoform X1 | ||||
Swissprot | F4JIJ7 | 2e-41 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A2R6RAQ0 | 1e-126 | A0A2R6RAQ0_ACTCH; Transcription factor bHLH36 like | ||||
STRING | POPTR_0011s05320.1 | 1e-73 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5105 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 7e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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