PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn177941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 418aa    MW: 45937.2 Da    PI: 6.5117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn177941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11187232454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h ++Er+RR+++N++f +Lr+++P+       K++ a+ L  Av YI +L
  Achn177941 187 NHVQAERQRREKLNHRFYRLRSVVPNV-----SKMDRASLLADAVAYIGEL 232
                 6999**********************6.....5***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-2727118IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.96E-16181253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.99E-12182235No hitNo description
PROSITE profilePS5088815.77183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-15187244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-14189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSVSLSSKAH QPHPTKSIFD IDNTDLHVDP EWFYMVSVTK SFVAGDEILG RTFSSGAYVW  60
LTGEHDIKFY DSPRVKEAHA HGIQTLVCIS TPLGVVELGS TNTIKEDWEL IQLAKSLFGL  120
VDHTTTLSKE PRPHLSPLER EMAKACLSSS DSGGPSDFES PDSKINLKKR GRKTTGTSSG  180
GKETPINHVQ AERQRREKLN HRFYRLRSVV PNVSKMDRAS LLADAVAYIG ELKAKTNELE  240
AKIRADQYSQ MPPKTHDNAR ASMTVEGGSS SSSCGHGMGA GEVDVKMIGS EAMIRVHCVD  300
VNYPVARFMD AMRELGIGVH HASVSKIKDL MLLDVVVRVP DGLQIGTWGS LGLMVMDYCE  360
RTNDSSHLDL MEVVLTLYAS NCRGENMNGL YESLDGRISA LEKLKEVEAA KQMEPTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-23181242263Transcription factor MYC2
5gnj_B4e-23181242263Transcription factor MYC2
5gnj_E4e-23181242263Transcription factor MYC2
5gnj_F4e-23181242263Transcription factor MYC2
5gnj_G4e-23181242263Transcription factor MYC2
5gnj_I4e-23181242263Transcription factor MYC2
5gnj_M4e-23181242263Transcription factor MYC2
5gnj_N4e-23181242263Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028075552.11e-120transcription factor MYC3-like
TrEMBLA0A2R6PHZ60.0A0A2R6PHZ6_ACTCH; Transcription factor bHLH14 like
STRINGPOPTR_0001s11400.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-48bHLH family protein