PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn161331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 598aa    MW: 66632.6 Da    PI: 4.6963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn161331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.41e-51171432128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 ppGfrFhPtdeelv +yLk+k+ g++l+  +++ e+d+yk++P++Lp  +k+k++++ w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++ +++
  Achn161331  17 PPGFRFHPTDEELVLYYLKRKICGRRLKP-DIVGETDVYKWDPEELPglSKLKTGDRLWFFFSPRDRKYPNGARSNRATRQGYWKATGKDRSITC-NSR 113
                 8*************************999.89***************6559999*****************************************.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kktLvfykgrap g++tdWvmhey+l
  Achn161331 114 AVGVKKTLVFYKGRAPAGQRTDWVMHEYTL 143
                 ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-5915166IPR003441NAC domain
PROSITE profilePS5100555.87616166IPR003441NAC domain
PfamPF023652.6E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MKVTEDASCF GGGGCWPPGF RFHPTDEELV LYYLKRKICG RRLKPDIVGE TDVYKWDPEE  60
LPGLSKLKTG DRLWFFFSPR DRKYPNGARS NRATRQGYWK ATGKDRSITC NSRAVGVKKT  120
LVFYKGRAPA GQRTDWVMHE YTLDEEELKR CQTAQDYYAL YKVYKKSGPG PKNGEQYGAQ  180
FREEDWADDD NTIVNDHANL ETPVKQVNNI ASVDNTGTNG QVQSGFNGLD EFMNQIAAES  240
LLVQPLGVDF GYALHEFFGE EENQSSLVDQ SFRETDLQER SMVLQPSWHQ NDVQPSFDLT  300
QSATSQLQLY EKPEVTSAPI ISRQESHDSE LEDYIEMDDL IGPGPTVQNV DNDLIGPTPT  360
VDKPVEDLQF DGFSELDRFH DAAMFIRDMG PINPEILPHS YSNNIQNKMV NQLDYQLQPH  420
SSYSSEINGQ LWMHGQNNID TPAEYNQGVA HLPTSGVVCD SSSASLPSGV YENQNQNQNQ  480
NQNQNQNQSG NVDDGGDSWL TSALWSFVES VPTTPASASE GAALVNRAFE RMSSFGRVRA  540
SAGATSVAAG NPVATLHRSG SRHSRGFFFY AVLGVLCAIL WVLIGTSVRV LTRYISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-481714316140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028089428.10.0NAC domain-containing protein 17-like isoform X1
TrEMBLA0A2R6RNS90.0A0A2R6RNS9_ACTCH; NAC domain-containing protein
STRINGXP_008237396.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-136NAC domain containing protein 17