PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn119651

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 372aa MW: 41956.1 Da PI: 8.8089

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn119651	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	134	157	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp Cg+ F + +L++H+ H Achn119651 134 YPCPACGEIFQKPNLLEKHQTIrH 157 99******************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.993	134	158	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	136	157	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.55E-10	165	370	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.2E-5	306	370	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MASFRPFFNN FFALFLLLLL HFGCFIFTTN SHHHHNSSKK RNASPPSHSS PSLKHKTRKA 60 LSSSWSFLKR ILTRTQTHPN PNPTITVSSR SSSFVFIVSP ETLESDPQRT RPVGSRPESD 120 ISSDLQFPLR NDIYPCPACG EIFQKPNLLE KHQTIRHAVM ELNDWDSGKN IVQIIFKTGW 180 PEKAKEPKIH RVLKIHNSPI TLTRFEEYRE SVKLRAARNG VVRRRDERCL ADGNELLRFY 240 CATFLCELGQ NGNSSICNHQ FCSACGIIGS GFSPKMDGIP TLSTGFKAHV AVPEDIEEEF 300 RFMGVKRAML VCRVIAGRVG CELDFVDKED PGFDSVVGKG PGARMRLDEE DELLVFNPRA 360 VLPCFVIMYT V*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MASFRPFFNN FFALFLLLLL HFGCFIFTTN SHHHHNSSKK RNASPPSHSS PSLKHKTRKA  60
LSSSWSFLKR ILTRTQTHPN PNPTITVSSR SSSFVFIVSP ETLESDPQRT RPVGSRPESD  120
ISSDLQFPLR NDIYPCPACG EIFQKPNLLE KHQTIRHAVM ELNDWDSGKN IVQIIFKTGW  180
PEKAKEPKIH RVLKIHNSPI TLTRFEEYRE SVKLRAARNG VVRRRDERCL ADGNELLRFY  240
CATFLCELGQ NGNSSICNHQ FCSACGIIGS GFSPKMDGIP TLSTGFKAHV AVPEDIEEEF  300
RFMGVKRAML VCRVIAGRVG CELDFVDKED PGFDSVVGKG PGARMRLDEE DELLVFNPRA  360
VLPCFVIMYT V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023881281.1	1e-164	uncharacterized protein LOC111993690
Refseq	XP_023894810.1	1e-164	uncharacterized protein LOC112006729
TrEMBL	A0A2R6P6C8	0.0	A0A2R6P6C8_ACTCH; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
STRING	cassava4.1_033577m	1e-156	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11834	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-107	C2H2 family protein