PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn096961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bZIP
Protein Properties Length: 324aa    MW: 35191.9 Da    PI: 4.6838
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn096961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.91.9e-17149203461
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                 +kr +r+ +NRe+ArrsR RK+a + eLe+ v++L +eN +L    ++l++ +++ k+
  Achn096961 149 VKRIKRMVSNRESARRSRSRKQAHLVELEQQVDQLRGENASLF---KQLTDAAQQFKD 203
                 79*************************************9999...777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.2E-13144201No hitNo description
SMARTSM003384.8E-18146210IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955148202IPR004827Basic-leucine zipper domain
PfamPF001701.2E-14149198IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-12149199No hitNo description
CDDcd147027.23E-7151201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKRGQSELAR EEVIAKYHHN SDDEDEEDLS IFPDTDALLT ALQQNTDCFA DVSASFRNRG  60
ILNGFPSCDV LTDTPLWSQD FTSKQSSIST PIDSQSSICV SSPNSTINPK GRDNKGMGAT  120
SGSSGEQSDE DDIEIEAGQC EQSTEPVDVK RIKRMVSNRE SARRSRSRKQ AHLVELEQQV  180
DQLRGENASL FKQLTDAAQQ FKDSTTNNRV LKSDVEALRA KVKLAEDMVA RGSLKSSLSH  240
LLQNHLGISQ SFNMCRLGGI VSPTITVGGG DDVSFPGITQ NSNLGVENAD AINGSIKNGI  300
ISDAVSCVSE NWLWEPHVPT MSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169RRSRSRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078814.11e-120basic leucine zipper 9
SwissprotQ6H5003e-66RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A2R6PJV20.0A0A2R6PJV2_ACTCH; Basic leucine zipper like
STRINGVIT_04s0008g02750.t012e-96(Vitis vinifera)
STRINGXP_009590020.11e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-47basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]