PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn088091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 278aa    MW: 30813.3 Da    PI: 7.4638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn088091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.8e-10190233755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Achn088091 190 IAAKNRRERISERLKVLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 233
                 5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-14181241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12182240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.377183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-12185237No hitNo description
SMARTSM003538.5E-12189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-7191233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPIDTQMSLV QTNTYYGNIF GNSSDLLETS EKTNGSLSSP SSTNSTVCGE AHNVIHFKAG  60
YNTFMHTDGN FLCFEKNDDY SIWEDNLIHG SYPYSASNSR RFQDFNCVQS TSFCDAIKES  120
KHKEPFGWPN SEANGNSTGA VLELGKQEQP CFNKRPHEGE SVQGVKKQCN SATRKSKPNS  180
NPPSKDPQSI AAKNRRERIS ERLKVLQELV PNGSKVDLVT MLEKAISYVK FLQLQVKVLA  240
TDEFWPVQGG KAPDISQVKE AIDAILSSQR ERNSSSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079436.11e-113transcription factor bHLH83-like
TrEMBLA0A2R6S1260.0A0A2R6S126_ACTCH; Transcription factor bHLH83 like
STRINGVIT_14s0006g01470.t014e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-58ROOT HAIR DEFECTIVE6