PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn079241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 333aa MW: 38643.9 Da PI: 9.1935 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 59 | 187 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kge 98 GfrFhPtdeelv +yL++kve+++l++e+ ik+vdiyk++PwdLpk+ + ++kewyfF+kr +ky+++ r++r+t sg+Wkatg d++++s+ ++e Achn079241 59 GGFRFHPTDEELVGFYLRRKVEKRTLSIEQLIKQVDIYKYDPWDLPKASTVGDKEWYFFCKRGRKYRNSIRPKRVTGSGFWKATGIDRPIHSTggeDRE 157 59**************************999***************888889****************************************9655555 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+kt+W+mhe+rl Achn079241 158 CIGLKKSLVYYRGNAGKGTKTEWMMHEFRL 187 6***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-53 | 50 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.527 | 57 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-25 | 60 | 187 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MANKIKEALF ITSQKQFLKD FGDDYCYPNA PKNIDETRAT EFMRLDEAAK IMKKAYFSGG 60 FRFHPTDEEL VGFYLRRKVE KRTLSIEQLI KQVDIYKYDP WDLPKASTVG DKEWYFFCKR 120 GRKYRNSIRP KRVTGSGFWK ATGIDRPIHS TGGEDRECIG LKKSLVYYRG NAGKGTKTEW 180 MMHEFRLPTN HDDKSTKHVD VKNITQEAEV WTICRILKRN TSYKNCIPDW KALSAKKNKP 240 IVDASSKTCS VEFDGTESYI EFRSSEVPVI RQNHEKKHFG NHFGEMNQTM SQAPFVASYS 300 SFCSPDTNEL IKYGDWDELR SVVEFAFDPF HV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 60 | 222 | 23 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115341.1 | 1e-149 | LOW QUALITY PROTEIN: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 4e-85 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2R6QTD2 | 0.0 | A0A2R6QTD2_ACTCH; Transcription factor JUNGBRUNNEN 1 like | ||||
STRING | XP_009778771.1 | 1e-122 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-87 | NAC domain containing protein 42 |