PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn078711

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 434aa MW: 48279.4 Da PI: 9.5242

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn078711	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.6	1.6e-18	155	237	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++qe+ Liea++e++ +l+rg lk +Weev+ + ++ g+ +++++qC++k+e+l+kry+ +k++ + + + +f ++ Achn078711 155 WSHQETVNLIEAYQEKWYSLKRGPLKSSQWEEVAVTVaARCGYeepSKTAVQCRHKIEKLRKRYRSEKQRPNPH------AWDFFALMH 237 *******************************999965567743368*******************99975......477887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR01217	7.3E-11	7	23	No hit	No description
PRINTS	PR01217	7.3E-11	74	90	No hit	No description
PRINTS	PR01217	7.3E-11	93	110	No hit	No description
PRINTS	PR01217	7.3E-11	125	150	No hit	No description
PROSITE profile	PS50090	6.284	154	215	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-19	154	239	No hit	No description
SMART	SM00595	3.5E-6	162	244	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MGLSLYVPAH KSPGPTHTQP PLQFALCATP TTTNPTNHRS HLKNKNKYVK THPTTAISTA 60 TDPPNPPQNQ LNPPLSKLQS PTSTHTPPPL QSMASPTSTT PPPPPPASPP LDPDQNPSHH 120 SSPSPSPPPP NPSSPRPLRS MIPASPAKKP QPLPWSHQET VNLIEAYQEK WYSLKRGPLK 180 SSQWEEVAVT VAARCGYEEP SKTAVQCRHK IEKLRKRYRS EKQRPNPHAW DFFALMHRLD 240 HGPLPISAQP MALIHYPKNN PKHGCGDGDD DDNDNSDKRS KSKSINRILG GHVSKIKAPA 300 NQKLGDGGDR GLVFLGKRSA RKRPERFERH KSESEGEEEE EEEVEEEEEE VVVGGGEGGR 360 GVVAELAAEI KAFAEGFVRM ENKKLEMMRE TERYRMEMEN KRMEMILESQ RKTVDTIVRA 420 FGSHKKMKTG QDI*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MGLSLYVPAH KSPGPTHTQP PLQFALCATP TTTNPTNHRS HLKNKNKYVK THPTTAISTA  60
TDPPNPPQNQ LNPPLSKLQS PTSTHTPPPL QSMASPTSTT PPPPPPASPP LDPDQNPSHH  120
SSPSPSPPPP NPSSPRPLRS MIPASPAKKP QPLPWSHQET VNLIEAYQEK WYSLKRGPLK  180
SSQWEEVAVT VAARCGYEEP SKTAVQCRHK IEKLRKRYRS EKQRPNPHAW DFFALMHRLD  240
HGPLPISAQP MALIHYPKNN PKHGCGDGDD DDNDNSDKRS KSKSINRILG GHVSKIKAPA  300
NQKLGDGGDR GLVFLGKRSA RKRPERFERH KSESEGEEEE EEEVEEEEEE VVVGGGEGGR  360
GVVAELAAEI KAFAEGFVRM ENKKLEMMRE TERYRMEMEN KRMEMILESQ RKTVDTIVRA  420
FGSHKKMKTG QDI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028126128.1	1e-102	probable serine/threonine-protein kinase samkC
TrEMBL	A0A2R6PEA3	0.0	A0A2R6PEA3_ACTCH; Trihelix transcription factor
STRING	XP_009792432.1	6e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12466	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-32	Trihelix family protein