PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn074601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 631aa    MW: 72475.7 Da    PI: 8.7146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn074601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1661e-2054147190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  +++++++ +r+r+++r+gC+a l+++k++     +w+vt + ++HnHel 
  Achn074601  54 DFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTENNPQRNRKSSRCGCQAYLRISKTTelgAPEWRVTGFANHHNHELL 147
                 6**************9998877356667999*************9999999********************99888889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1754147IPR004330FAR1 DNA binding domain
PfamPF105514.4E-20270361IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MGLYDDPSDQ RSLSLDDTSS TEESPDETRL SLETANDAVP YTGQRFATHD AAYDFYSEFA  60
KRCGFSIRRH RTEGKDGVGK GLTRRYFVCH RAGNTPVKTS TENNPQRNRK SSRCGCQAYL  120
RISKTTELGA PEWRVTGFAN HHNHELLEPN QVRFLPAYRT ISDTDKSRIL MFAKTGISVQ  180
QMMRLMELEK CVEPGYLPFT EKDVRNLLQS FRKVDPEDES IDLLRMCRNI KDKDPNFRFE  240
FTLDLNNRLE NIAWSYASSV QSYEIFGDAV VFDTTHRLTA FDMPLGIWVG VNNYGMPCFF  300
GCVLLREENL RSFSWAVKAF LSFMNGKAPQ TLLTDQNMCL KEAIAMEMPA TKHALCIWMI  360
VAKFPSWFNA VLGERYNEWK AEFYRLYNLE AIEDFELGWR DMVNSFGLHT NRHITNLFAL  420
RSLWALPYLR SHFFAGMTTT GQSKSINAFI QRFLSAQTRL AHFVEQWVHM WGDVLNVGDL  480
DTMVRGRMCG TWGLSCPPMP MWAGAWKRSK EIVLSSKGIQ SLKDGHLGVK MWRVTHVTSQ  540
QMKASQTNEC RHQDEAVQIS RPMPMWAGAW KRSKEIVLSS KGIQSLKDGH LGVKMWRVTH  600
VTSQQMKASQ TNECRHQDEA VQISRSPHMR *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079946.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_028079947.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2R6RGG20.0A0A2R6RGG2_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGcassava4.1_002947m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]