PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn073331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 1144aa    MW: 127278 Da    PI: 8.2892
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn073331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.4e-13158249199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p + ae++       ++++ +  +l+ +d++ ++W++++          + +GW+ Fv+ ++L +gD+v+F   ++++++l
  Achn073331 158 FCKTLTASDTSTHGGFSVPLRAAEKIfppldftMQPPVQ--ELVTRDLHDNVWTFRH----------IYRGWSLFVSGKRLFAGDSVLFI--RDEKQQL 242
                 99*****************************96555555..8999************..........889********************..5688889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  Achn073331 243 LLGIRRA 249
                 ****997 PP
2Auxin_resp116.72e-38274357183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPr+s+seFv++++k+ ka+  +++++GmRf+m+fete+s++rr++Gt++g+sdldp+rW+ S+Wr+L+
  Achn073331 274 AAHAAANNSPFTVFYNPRTSPSEFVIPLAKYYKAVCsNQIAPGMRFRMMFETEESETRRYMGTITGISDLDPLRWKSSQWRNLQ 357
                 79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-34148277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-30149263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-12157239No hitNo description
PfamPF023621.9E-11158249IPR003340B3 DNA binding domain
SMARTSM010191.6E-15158250IPR003340B3 DNA binding domain
PfamPF065071.4E-33274357IPR010525Auxin response factor
PROSITE profilePS5174521.11710181108IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1144 aa     Download sequence    Send to blast
MKMPANGGGA SPAAANPSEG EKKSINPELW QACAGPLVNL PPAGTHVVYF PQGHSEQVRI  60
IYPYKYAYIR TIPSKKTRAR LCLVAASMKK DVDAQIPNYP NLPSKLLCVL HNVMLHADTE  120
TDEVYAQMTL QPVPSFDKDA LLRSDLSMKA NKPQTEFFCK TLTASDTSTH GGFSVPLRAA  180
EKIFPPLDFT MQPPVQELVT RDLHDNVWTF RHIYRGWSLF VSGKRLFAGD SVLFIRDEKQ  240
QLLLGIRRAN RQPTNLSSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RTSPSEFVIP  300
LAKYYKAVCS NQIAPGMRFR MMFETEESET RRYMGTITGI SDLDPLRWKS SQWRNLQVGW  360
DESTAGERRS RVSVWEIEPI TAPFFICPTP PFFGSKRPRQ SGMPDDESSC LDNLFKRTMP  420
WLGDDMYMKD PQSLPGLSLV QWMNMQQQKP SLGNSLQPNY LHSLSGSVLQ NLAGTDLKCQ  480
LGLSAPQIPP KNNIQFNAQK PSQQAQLDQL QKLPAATLNS LGSIIQQQKQ KQKQLGDITQ  540
QQKQNLMNQT LPSAQVQIQQ LHSTMNPTHN IHQQQPSLQN HQVQRNLSQN LQQQQQQIIG  600
QNQQQNLMPS QLPDQVNQQV QMSENQSQLQ LLHKLQQQQE EFLAQQSTLQ QPPQLPQMQD  660
QRRQLLDASQ SFPRSVMPSL TVDVPQATAI SPPQSQLISL QISRTNSQSN FQFSHQLQQT  720
KVQQLGGLPD FHGHVGVGPG HTPTINQLST NGSTLLTGAV GGGQSGVTDD IPSCSTSPST  780
NNCPNLVQPT MKSRAQRSTT NGEEMVQSSS TLLGSSGLET MSVNANLVKD LQQKPDIKPT  840
VNISKGQNQG FFAPQTYLNA TGTQMDYLDA SSSATSVCIS QNDVHLQQNN NSMSFNQHSV  900
LFRDTSQDVE VQGDPRNSVP FGANINGQLG MPMIPDPLLT KSMVGSGKDL SNDLSGGMLS  960
SYENPKDIQP ELSSSMVSQS FGVPDMTFNS LDSTINDSSF LSACGWAPPP QPQFQRMRTY  1020
TKVYKRGAVG RSIDITRYSG YEELKQDLDR RFGIEGQLED RHRIGWKLVY MDHENDVLLV  1080
GDDPWDWEET QNGGSQGWNT SNLHFEMKKR RMIAVARIRA KHNATAINNR VYKLNQNVNN  1140
PLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1501837844388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096028.10.0auxin response factor 19-like isoform X3
TrEMBLA0A2R6Q4F60.0A0A2R6Q4F6_ACTCH; Auxin response factor
STRINGVIT_11s0065g00310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19