PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn065071

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 779aa MW: 88331 Da PI: 6.7381

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn065071	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.1e-20	129	222	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel Achn065071 129 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNIHNHELL 222 6*************999887455667****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-17	129	222	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-23	345	436	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.52	621	656	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-7	627	654	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-6	631	658	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MTAFVRGGSV DGSGIWLGLS CKSPFSVDNC QQTNLLGELN VILEPGGFLE LSMSSGEVLC 60 LERPLPSVGI MSELTSVVRD ASENGTDLSP DDIGTIEEMP EDTILSRQTS VNLVPFIGQR 120 FVSQDAAYEF YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL 180 QRNRKSSRCG CQAYMRIVKR ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAYCTMSADD 240 KSRICMFAKA GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDPIDLLK 300 MCKDKKEKDP NFKYNFKIDA NNRLEHIAWS YSSSIRSYEA LGDAVVFDTT HRMDAYDMLL 360 GIWIGVDNHG MNCFFGCVLL RDENIHSFSW ALKTFLAFMN GKAPETILTD QNVWLKEALA 420 VEMPRTKHVF CIWHIISKFS DWFSVLLGSQ YDKWKAEFHR LHNMHSVEEF EVGWREMVDT 480 YGLHGNKHIV SLYALRTFWA LPFLRSYFFA GMTSSFQSES ISAYIQRFLS AQSVLDNFVE 540 QLAAVVDVKD AGSKHKMQRK IQKVSLKTGS PIESHAATVL TPYAFCKLQE ELVLAPQYAS 600 LMVEESYFVV RHHTEMDGGC KVIWVPHEEF ISCSCHQFEF SGILCRHVLR VLSTNNCFHI 660 PDQYLPIRWR DVTSSMTKPA QVSTSEEHAV KVQLLQSIVS TLIAVSIETE ERLDAAYDQI 720 ATVLSHIKEF PGPSHDHVDM YRKRRRCSVP CYGQFGHEAT DCSMMGGDDM NGDGLGFL*

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MTAFVRGGSV DGSGIWLGLS CKSPFSVDNC QQTNLLGELN VILEPGGFLE LSMSSGEVLC  60
LERPLPSVGI MSELTSVVRD ASENGTDLSP DDIGTIEEMP EDTILSRQTS VNLVPFIGQR  120
FVSQDAAYEF YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL  180
QRNRKSSRCG CQAYMRIVKR ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAYCTMSADD  240
KSRICMFAKA GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDPIDLLK  300
MCKDKKEKDP NFKYNFKIDA NNRLEHIAWS YSSSIRSYEA LGDAVVFDTT HRMDAYDMLL  360
GIWIGVDNHG MNCFFGCVLL RDENIHSFSW ALKTFLAFMN GKAPETILTD QNVWLKEALA  420
VEMPRTKHVF CIWHIISKFS DWFSVLLGSQ YDKWKAEFHR LHNMHSVEEF EVGWREMVDT  480
YGLHGNKHIV SLYALRTFWA LPFLRSYFFA GMTSSFQSES ISAYIQRFLS AQSVLDNFVE  540
QLAAVVDVKD AGSKHKMQRK IQKVSLKTGS PIESHAATVL TPYAFCKLQE ELVLAPQYAS  600
LMVEESYFVV RHHTEMDGGC KVIWVPHEEF ISCSCHQFEF SGILCRHVLR VLSTNNCFHI  660
PDQYLPIRWR DVTSSMTKPA QVSTSEEHAV KVQLLQSIVS TLIAVSIETE ERLDAAYDQI  720
ATVLSHIKEF PGPSHDHVDM YRKRRRCSVP CYGQFGHEAT DCSMMGGDDM NGDGLGFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	741	745	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058977.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2R6P5S7	0.0	A0A2R6P5S7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_07s0005g01120.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13535	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]