PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn056961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GeBP
Protein Properties Length: 401aa    MW: 44073.4 Da    PI: 4.4415
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn056961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.61.2e-35125228297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk........spsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                 lfqrlw++eDei lLqG++d++a++g         +  +  d++ fy+++k++++++++k+qlveK+rrLKkK+++  +k+ sgke +f+++hdq +fe
  Achn056961 125 LFQRLWTDEDEIELLQGFLDYTAQRGGggggnsshH--HhyDTTVFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKIGSGKEYAFKSPHDQATFE 221
                 79***********************98788875423..2469********************************************************* PP

      DUF573  91 lskkiWg 97 
                 +s+kiW 
  Achn056961 222 ISRKIWS 228
                 ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.6E-33126228IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MASEEDPTVY GEEDLDEDDE EDSEEDEGLT IPTSNPPQPD LDDDLDDDDL LDDDDDTSSS  60
AGKVTVAIAA VPNGDPSKPV ASGLVTVAAA DSLLPDPKRH RIEEVTIAAA AEKKPSAAMD  120
DSRRLFQRLW TDEDEIELLQ GFLDYTAQRG GGGGGNSSHH HHYDTTVFYD QIKSKLQLDF  180
NKNQLVEKLR RLKKKYRNVL NKIGSGKEYA FKSPHDQATF EISRKIWSGG GLDDDEANPN  240
SNSNPNPNFF DHNNNGIDTN SLERKGSKSR KRSRVKIEEK QQFNQQVPPT ATPTATPTAT  300
SIPNLIEETV RSCLSPLFKE LLHNATSGVN GSRGYSGVAA LNPMPLGFGS PLGLNFSGGD  360
VMDEKWRKQQ ILELEVYSKR LELVQDQIKS ALEELRSMGS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079823.11e-153probable transcription factor At3g04930
RefseqXP_028079824.11e-153probable transcription factor At3g04930
RefseqXP_028079825.11e-153probable transcription factor At3g04930
TrEMBLA0A2R6RBD90.0A0A2R6RBD9_ACTCH; Transcription factor
STRINGSolyc02g083750.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-55DNA-binding storekeeper protein-related transcriptional regulator