PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn048091

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CAMTA

Protein Properties

Length: 1075aa MW: 120842 Da PI: 6.1978

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn048091	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.9	7.1e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 l+ ++rwl++ ei++iL nf+k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw Achn048091 20 LEAQHRWLRPAEICEILRNFKKFRIAPEPAHKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYW 118 5679********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 lLeee+++ivlvhy+evk Achn048091 119 LLEEEHSHIVLVHYREVK 136 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.2	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.2E-77	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.0E-49	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.3E-6	486	573	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.68E-18	487	573	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.7E-6	487	572	IPR002909	IPT domain
PROSITE profile	PS50297	17.767	673	793	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.1E-18	675	785	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-17	675	783	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.16E-13	688	781	No hit	No description
Pfam	PF12796	6.9E-9	695	784	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.018	723	752	IPR002110	Ankyrin repeat
SMART	SM00248	220	761	790	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.19E-7	894	949	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	14	898	920	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.693	900	928	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.036	901	919	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.01	921	943	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.725	922	946	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.8E-4	926	943	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence Send to blast
MAESRRYGLG TQLDIEQILL EAQHRWLRPA EICEILRNFK KFRIAPEPAH KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWLL 120 EEEHSHIVLV HYREVKGHRA NFNRIKEAEE AILNSQESEE IVSNSDVYSS VSSKFNPHNY 180 QVTSQTTDTS LNSTQASEYE DAESDDYLGK LPGISGMDFG SLSEGEKGKT SVNAALTYPS 240 EKHLDLPSWE DVLENSGTGI QSVPFQPSLS ANRSDIMSFN SGRGNEPRGQ FLIEGFSTKQ 300 EVVSYPHQQD KWQISEDDSL HISKWSMDQK LHKDSSYHLT TGLHGRGHNV DLLYLVGPQH 360 EHPSDQNKHY TQTDFQMHLT YGEGGSAMKS ELDSNLTVEE KAEPSPLKQP LLDGLLKEGL 420 KKLDSFDRWM TKELGDVNES HLQSSSGTYW ETVEAEDGVD DSSIASQAHL GAYMLGPSLS 480 QDQLFSIIDF SPNWAYAGSE IKVLITGKFL NSQQDLEKCK WSCMFGEVEV PAEIIADGVL 540 RCHTPLHNAG RVPFYVTCSN RLACSEVREF EYRVNNFQDA DILDTSYGRT NEILLRMRFG 600 KFLSLESASP PSCVSSPSGE NSHLSSKISL LLKEDSNEWE QMLMLTSEDD FSPEKIKEQL 660 LQKLLKEKLH VWLLQKVAEG GKGPSVLDED GQGVLHFAAA LGYDWAILPT LAAGVSINFR 720 DVNGWTALHW AASCGRERTV GFLISLDAAP GALTDPTPIH PGQTPADLAA SNGHKGIAGY 780 LAESSLSSHL SSLQLKDTKE SGSGETSGMK VVQTVSERTA TPIMDADLAH GLSLKDSLAA 840 VCNATQAAAR IHQVFRVQSF QRKQIKEYGD DKFGMSEERA LALVAVKSKS RLGHREEPVQ 900 AAAIRIQNKF RSWKGRKEFL TIRQQIVKIQ AHVRGHQVRK NYRKIIWSVG IVEKVILRWR 960 RKGSGLRGFK QEAFTQASSK NTSSKEDDYD FLKEGRKQTE ERLEKALARV KSMVQYPEAR 1020 DQYRRLLNVV TEMQETKAVY DKVLNSTEEA SDFDDDLIDL EALLDDDTFM HTVS*

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence Send to blast

MAESRRYGLG TQLDIEQILL EAQHRWLRPA EICEILRNFK KFRIAPEPAH KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWLL  120
EEEHSHIVLV HYREVKGHRA NFNRIKEAEE AILNSQESEE IVSNSDVYSS VSSKFNPHNY  180
QVTSQTTDTS LNSTQASEYE DAESDDYLGK LPGISGMDFG SLSEGEKGKT SVNAALTYPS  240
EKHLDLPSWE DVLENSGTGI QSVPFQPSLS ANRSDIMSFN SGRGNEPRGQ FLIEGFSTKQ  300
EVVSYPHQQD KWQISEDDSL HISKWSMDQK LHKDSSYHLT TGLHGRGHNV DLLYLVGPQH  360
EHPSDQNKHY TQTDFQMHLT YGEGGSAMKS ELDSNLTVEE KAEPSPLKQP LLDGLLKEGL  420
KKLDSFDRWM TKELGDVNES HLQSSSGTYW ETVEAEDGVD DSSIASQAHL GAYMLGPSLS  480
QDQLFSIIDF SPNWAYAGSE IKVLITGKFL NSQQDLEKCK WSCMFGEVEV PAEIIADGVL  540
RCHTPLHNAG RVPFYVTCSN RLACSEVREF EYRVNNFQDA DILDTSYGRT NEILLRMRFG  600
KFLSLESASP PSCVSSPSGE NSHLSSKISL LLKEDSNEWE QMLMLTSEDD FSPEKIKEQL  660
LQKLLKEKLH VWLLQKVAEG GKGPSVLDED GQGVLHFAAA LGYDWAILPT LAAGVSINFR  720
DVNGWTALHW AASCGRERTV GFLISLDAAP GALTDPTPIH PGQTPADLAA SNGHKGIAGY  780
LAESSLSSHL SSLQLKDTKE SGSGETSGMK VVQTVSERTA TPIMDADLAH GLSLKDSLAA  840
VCNATQAAAR IHQVFRVQSF QRKQIKEYGD DKFGMSEERA LALVAVKSKS RLGHREEPVQ  900
AAAIRIQNKF RSWKGRKEFL TIRQQIVKIQ AHVRGHQVRK NYRKIIWSVG IVEKVILRWR  960
RKGSGLRGFK QEAFTQASSK NTSSKEDDYD FLKEGRKQTE ERLEKALARV KSMVQYPEAR  1020
DQYRRLLNVV TEMQETKAVY DKVLNSTEEA SDFDDDLIDL EALLDDDTFM HTVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cxk_A	1e-13	487	573	9	89	calmodulin binding transcription activator 1
2cxk_B	1e-13	487	573	9	89	calmodulin binding transcription activator 1
2cxk_C	1e-13	487	573	9	89	calmodulin binding transcription activator 1
2cxk_D	1e-13	487	573	9	89	calmodulin binding transcription activator 1
2cxk_E	1e-13	487	573	9	89	calmodulin binding transcription activator 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028069892.1	0.0	LOW QUALITY PROTEIN: calmodulin-binding transcription activator 3-like
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2R6RJG1	0.0	A0A2R6RJG1_ACTCH; Calmodulin-binding transcription activator 3 like
STRING	VIT_07s0141g00250.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]